BAC Information

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BAC

Clone NameMSMg01-149G11
Chromosome2 (Build37)
Map Location 56,732,904 - 56,733,272
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G11.T7 (MSMg01no149_g11.b1)MSMg01-149G11.TJ (MSMg01no149_g11.g1)
ACCAG352131AG352132
length717721
length of high quality
(start - end)
374 (49 - 422)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no149_g11.b1 PHD_FILE: MSMg01no149_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:39 2005CHROMAT_FILE: MSMg01no149_g11.g1 PHD_FILE: MSMg01no149_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCGC
GGAATTCATTTAATGTTCCTCACAAATTTTATTTGGAGACAAGTTCTCAC
AAAATTATCTAGGTTCAAGTCACAGTTTCTATATGGGTCATGCAGGCCTC
AGACTCATTACTTCACAGCTTCTGCACCTCAATAGCTGAGATTCAGACAC
ATCCAGCCATACGTGGATGTTCCAGGGATTTCTGGATCTGCACTAAAAGG
ATATTGTCACACTCTACATATATCACATGCACATGCATGGTTTTGGGGAG
GTTCCTGCAGGTCTTCTCTGGAAGTCTATGAGGCAATTGAGGTAGAAGAC
CATATCTTACTGGATGCAGCAGGTAACAAATGAAGAATGCATTACATGCT
GGAATCAGGAGTTTAAACTGCTAGGTACCTAGTATGAAGAGATGGTATCA
TTTGATGGGCCCAGCATACCTCTGCTGAGCCACTCTGCTAGCATGGCTTC
ATTTTGCTTCTTGTTCTTAAAAATTAAAATATCATATCATTACATTTCTT
TCTTTCCATCTATACCATGCTGCTTCCACTCCCTCTCAAATTTAAGGACT
CTTTTTCATTTAAGTTATTGTTGTATACATATATATCTCTGCATATGTAT
CCCTTTATTTATATGACAATAATGCCTCAATACCTATATTCAAACCACTT
AGTCTATCTCGTGATGC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGATACAGTTGGAAACAGTCTTAAG
ATGAAAGCTTATCTCTGTAAATACTAACATTAAAAACAGAGATATCTTGG
GGAAGCAACTAAACAACTTCAATGACTAAAGACACTTGACACTCAACCTT
GACAAATTGAATTTGTTCTCTGAGACTCATATAGTAGAATGAATGATTCA
ATTCCTGATAACTGGCTTCTGACTCACATATACACTGTGACACACATATG
TGTTTATGCACACAAAAATATAAATAAATAAATGTAATTAAGTTGAAAAA
GAAATCTCAAATAAAAAAATCTAATGATGAACTTGAAAGCTCTAAATCAT
CAAAAGATAAACTCAAATCCACTAAATGTCAAGAACTAATAAGAACATCA
CATAAATTAATTAGAGAATAAAACAGTATTATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
CTATATATACATAAATATAAATCTAACAAAATATCCACATATATAACTAT
CACTTTCTATTTTATCGCCCCTATATTACCCCCTCTATACCCTCCTCCTA
TCTATAATTTATCCCTACCACTTTTCTTTTCCGACCATAATATAATAACT
ATTCACACTAATAAATCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g11.b1 MSMg01no149_g11.b1 CHROMAT_FILE:
MSMg01no149_g11.b1 PHD_FILE: MSMg01no149_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:39 2005
         (374 letters)



>mm_chr2_56732701_56733474
          Length = 774

 Score =  644 bits (333), Expect = 0.0
 Identities = 360/369 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatttaatgttcctcacaaattttatttggagacaagttctcacaaaattatcta 63
           |||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 572 gaattcatttaatgttgctcaaaaattttatttggagataagttctcacaaaattgtcta 513

                                                                       
Query: 64  ggttcaagtcacagtttctatatgggtcatgcaggcctcagactcattacttcacagctt 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 512 ggttcaagtcacactttctatatgggtcatgcaggcctcagactcattacttctcagctt 453

                                                                       
Query: 124 ctgcacctcaatagctgagattcagacacatccagccatacgtggatgttccagggattt 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgcacctcaaaagctgagattcagacacatccagccatacgtggatgttccagggattt 393

                                                                       
Query: 184 ctggatctgcactaaaaggatattgtcacactctacatatatcacatgcacatgcatggt 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 ctggatctgcactaaaaggatattgtctcactctacatatatcacatgcacatgcatggt 333

                                                                       
Query: 244 tttggggaggttcctgcaggtcttctctggaagtctatgaggcaattgaggtagaagacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttggggaggttcctgcaggtcttctctggaagtctatgaggcaattgaggtagaagacc 273

                                                                       
Query: 304 atatcttactggatgcagcaggtaacaaatgaagaatgcattacatgctggaatcaggag 363
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atatcttactggatgcagtaggtaacaaatgaagaatgcattacatgctggaatcaggag 213

                    
Query: 364 tttaaactg 372
           |||||||||
Sbjct: 212 tttaaactg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)