BAC Information

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BAC

Clone NameMSMg01-149G19
Chromosome2 (Build37)
Map Location 103,073,437 - 103,073,931
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G19.T7 (MSMg01no149_g19.b1)MSMg01-149G19.TJ (MSMg01no149_g19.g1)
ACCAG352146AG352147
length714706
length of high quality
(start - end)
495 (50 - 544)563 (72 - 634)
definitionCHROMAT_FILE: MSMg01no149_g19.b1 PHD_FILE: MSMg01no149_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:41 2005CHROMAT_FILE: MSMg01no149_g19.g1 PHD_FILE: MSMg01no149_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAGGCG
CGGAATTCTCTTATATTTCTTACTGAAAAAAAGTGATTGAGATTGTGACT
AGGATTGCATTGAATGTATACACGGAGTCAATGTGGGAAGGATGGGACCT
AATTAATATTGAGTTTTACACTTAAATTGTCTTTTGCTTCTTCAGTGTCA
TAGAGTTTTCAGGGTGGGGGTCTTATGTTTTTCACTAAAATCAATACTAA
GAATTTCACATTCATTCCTGCTACTGTTAACAAAATCACTTTGAAAATGT
GCACTGGTTGGCTTTTGTCAACTGTACTCAGGTTAGAGTCATGTGAGAAA
GGACATCAGCTGAGGTGCTAACTCTGCCCAACTGGCCGGTGACATGGCTG
TGAGGCACTTTCTCTGGTATCACATTTGCACTTTAGGAGTTGATGGGTGG
CCAGCTTCATCTTCATGAGGAACCCCAGCAGGAAATGTGTAGCCCCAAAG
ATTAGAGACCATTACAGCATGTCTAGAGCAACCTAAGAAGGCGAAATACA
AACAGAGATAAAAGAGAAAAACAGTGAATGACAGTATTAGAGACAAAATG
AAATTTAAAAATCTATTCAATTAATTCAAAAGAAGCCATGGCAGACAAGG
AGGAAAGAAGAACAGTAAAAATATGGTCTAAGCATAAAAGAGACCACAAA
ATACACTCAAATAN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCAAATTCACTAATTCAGTGAGACTGGCTGGCCAGG
TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGAAC
AGCCAGGGCTACACAGAGAAACTCTGTCTTGAAAAACCAAAACAAACAAA
CAAACAAACAAACAAACAAATGAAGTGGAGACACCTGGACACTGCTACAT
GCCTTTAATCTTAGCACTAGGAAGTAAGTGGAAGGCTGATTTCTGTGAGT
TCAAGGTCAGCCTGTGTCTCTATAGTTAAGTTAGTTCCAAGCTGGCCATG
GGCAAATAGTGATTCTTGTTGAAAACAAAGTGGGGAGGGATTGAAAACAC
CTGACATCAACCTCTGACCGATACATGCACACATGTGTACATGCTCTCAG
GCACACACATGTACATGCTCTCAGGCACACACATGCACATGCTCTCAGGC
ACACACATGCACATGCTCTCAGGCACACACATGTACATGCTCCCATGAAC
ACACACACATGCCCTGAATACCTTTCTATGCCTTTTGTCTTCCAGCCTGA
TTTTAATAACTTCCATCCTATCTTGCCTATGTGTGAAAATGCCGCTTGTT
TGAATACTTTCTTTGTGTTAGACGCTTGGCTGTTTCCAGCTTTCTGCTAT
CATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g19.b1 MSMg01no149_g19.b1 CHROMAT_FILE:
MSMg01no149_g19.b1 PHD_FILE: MSMg01no149_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:41 2005
         (495 letters)



>mm_chr2_103073237_103074131
          Length = 895

 Score =  870 bits (450), Expect = 0.0
 Identities = 484/496 (97%), Gaps = 5/496 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcttat--atttcttactgaaaaaaagtg-attgagattgtgactaggattgca 60
           ||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gaattctcttattaatttc-tactgaaaaaaagtgtattgagattgtgactaggattgca 259

                                                                       
Query: 61  ttgaatgtatacacggagtcaatgtgggaaggatgggacctaattaatattgagttttac 120
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 tcgaatgtatacacggagtcaatgtgggaaggataggacctaattaatattgagttttac 319

                                                                       
Query: 121 acttaaattgtcttttgcttcttcagtgtcatagagttttcagggtgggggtcttatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 acttaaattgtcttttgcttcttcagtgtcatagagttttcagggtgggggtcttatgtc 379

                                                                       
Query: 181 tttcactaaaatcaatactaagaatttcacattcattcctgctactgttaacaaaatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttcactaaaatcaatactaagaatttcacattcattcctgctactgttaacaaaatcac 439

                                                                       
Query: 241 tttgaaaatgtgcactggttggcttttgtcaactgtactcaggtt-agagtcatgtgaga 299
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 440 tttgaaaatgtgcactggttggcttttgtcaactgtacccaggtttagagtcatgtggga 499

                                                                       
Query: 300 aaggacatcagctgaggtgctaactctgcccaactggccggtgacatggctgtgaggcac 359
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 aaggacatcagctgaggcgctaactctgcccaactggccagtgacatggctgtgaggcac 559

                                                                       
Query: 360 tttctctggtatcacatttgcactttaggagttgatgggtggccagcttcatcttcatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctctggtatcacatttgcactttaggagttgatgggtggccagcttcatcttcatga 619

                                                                       
Query: 420 ggaaccccagcaggaaatgtgtagccccaaagattagagaccattacagcatgtctagag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggaaccccagcaggaaatgtgtagccccaaagattagagaccattacagcatgtctagag 679

                           
Query: 480 caacctaagaaggcga 495
           ||||||||||||||||
Sbjct: 680 caacctaagaaggcga 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)