BAC Information

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BAC

Clone NameMSMg01-149I13
Chromosome2 (Build37)
Map Location 145,656,648 - 145,656,949
singlet/doubletsinglet
Overlap geneRin2
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I13.T7 (MSMg01no149_i13.b1)MSMg01-149I13.TJ (MSMg01no149_i13.g1)
ACCAG352227AG352228
length714713
length of high quality
(start - end)
202 (124 - 325)302 (82 - 383)
definitionCHROMAT_FILE: MSMg01no149_i13.b1 PHD_FILE: MSMg01no149_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:50 2005CHROMAT_FILE: MSMg01no149_i13.g1 PHD_FILE: MSMg01no149_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGGG
CGGAATTCAAAAATTTCCCCGAGAACAAAAAAATAACAGTAGTGATTAAT
AAATTCAAAAAGAAATGCTAAAAGTTGAGGGACTACTCTAAATGTGAGGT
TGAAAGGTCAATTAGAGGGGACTAGAGAGATGGCTCAGCGGTTAAAAGCA
CTGGTTGCTCTTCCAGAGGTCCTGAGCTCAATTCCCAGCAACCACATGCT
GGCTCACAATCATCTATAACAAGATCTGGTGCCCTCCTCTGGTGTGCAGG
CATACATGTGAGCAAAACACTGTCTATGAGTAAGTCTTTTAAAGACAAGA
AAAGGCCAGTTGGACAGAGAAGTCTAATCGGGGGAGGAGGTTAAAGGAAG
ACGACTCTAAGAAAGGATATCCCCCCCAGAGAAGAAAAGAGAAGAAATCT
CTTAGACGCTGAATCCCCACCATCAGTGAGCATCAGATTACAAGCACGAG
CCAGAAAGTTTAAGGAGCACATCAGCCTTGCCTAACAGCAGGTACAGAAG
CCAGCACAGGCCAGAAGGTCTGACTCGAGACACACAAGAGTACTTGTGTG
AAAGGACCCGCGGTGTAATACTTGCAATTCCCGCTGAAAGTCCACGACGA
GGGTGAAATAACATATGAATCCCCCTGTAAAATCCGGATGGAGCAAGTCT
GCAACGCACGAAAC
NCGATGTAGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGTGGTTTTAGAAAAAAA
ATGAGATCTGACATCCCTTCATTAAAGAATTAATTACACAGGTGAGACTA
GCTTGCGATTACAAATGCCCCAGAGAGCCATTCAATGTGCCTCAATTCTT
GTTATCTAGGAAAGTTCTTTTTCCAAGGAGCATTTAAATTTTCTTCTCTT
GATTACTAACAGTAGGAATGTATATTGTGAAGAAAACATATCTTACAAAA
TAAAGTGATGCACAGTGATGCATAGGTTCTTCCGGTCCCTGGGGATGCTG
GGACAGGAGGATGGGGACTCTGAGATCTGCGGGTGCTATAAAGAAAGTCC
TATCTCAAAACAAACAAAACACACAAACAAATATAAAATAGCTCAGGAGG
GGGGGCTGATAACAAGTTCAAGGTTATCCTTGGCTACAGAGTAAGTTAGT
AGTCAGTCTAAACCTACTGAAGGCCCTGTCTCAAAAAACAAACTAAACCC
ACACAAACAAACACACATGAGTTCACCTACAGAGGCAAAACCGGGTACTG
TTCTTGTTGTATTTGACACAAAGATAACAGAGAGAAGGAATATGTTTTGG
TGGATGTGCACCCAGCCATGTAAAAAGCCTATACTCTTTCATCTATATCC
ACTATTTCCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i13.g1 MSMg01no149_i13.g1 CHROMAT_FILE:
MSMg01no149_i13.g1 PHD_FILE: MSMg01no149_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:50 2005
         (302 letters)



>mm_chr2_145656448_145657149
          Length = 702

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtggttttagaaaaaaaatgagatctgacatcccttcattaaagaattaattacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtggttttagaaaaaaaatgagatctgacatcccttcattaaagaattaattacacag 260

                                                                       
Query: 61  gtgagactagcttgcgattacaaatgccccagagagccattcaatgtgcctcaattcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagactagcttgcgattacaaatgccccagagagccattcaatgtgcctcaattcttg 320

                                                                       
Query: 121 ttatctaggaaagttctttttccaaggagcatttaaattttcttctcttgattactaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatctaggaaagttctttttccaaggagcatttaaattttcttctcttgattactaaca 380

                                                                       
Query: 181 gtaggaatgtatattgtgaagaaaacatatcttacaaaataaagtgatgcacagtgatgc 240
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 381 gtaggaatgtatattgtgaagaaaacataccttagaaaataaagtgatgcacagtgatgc 440

                                                                       
Query: 241 ataggttcttccggtccctggggatgctgggacaggaggatggggactctgagatctgcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggttcttccggtccctggggatgctgggacaggaggatggggactctgagatctgcg 500

             
Query: 301 gg 302
           ||
Sbjct: 501 gg 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)