Query= MSMg01no149_i21.b1 MSMg01no149_i21.b1 CHROMAT_FILE:
MSMg01no149_i21.b1 PHD_FILE: MSMg01no149_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:52 2005
(551 letters)
>mm_chr2_28445135_28446085
Length = 951
Score = 975 bits (504), Expect = 0.0
Identities = 535/552 (96%), Gaps = 12/552 (2%)
Strand = Plus / Minus
Query: 2 ggaattctttaagcttatcgaaacgctctatatcggctggagatgcagctcagtggttaa 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggaattctttaagctgattgaaacgctctatatcggctggagatgcagctcagtggttaa 542
Query: 62 ggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccagtc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccagtc 482
Query: 122 ccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagattc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagattc 422
Query: 182 atattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacataa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacataa 362
Query: 242 aatgtaaatagtataggggggctggagagatggttctgctgttaataacacttgctgctc 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 aatgtaaatagtataggggggctggagagatggctctgctgttaataacacttgctgctc 302
Query: 302 ttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaact 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaact 242
Query: 362 cctttcaagggcgatctgactttttggatcttctgggcaccttcacttacacacacacac 421
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 cctttcaagggtgatctgactttttggatcttctaggcaccttcacttacacacacacac 182
Query: 422 acacacacacacatacacacacacacacacacacacacacacacacg--cgcgtgcgcat 479
||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 181 acacacacacaca----------cacacacacacacacacacacacgtgcgcgtgcgcat 132
Query: 480 ataattaaaaacaagaacagatctaaatatataaaatcagtataaagaaggaagtaaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ataattaaaaacaagaacagatctaaatatataaaatcagtataaagaaggaagtaaagg 72
Query: 540 gcatttaaatat 551
||||||||||||
Sbjct: 71 gcatttaaatat 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_i21.g1 MSMg01no149_i21.g1 CHROMAT_FILE:
MSMg01no149_i21.g1 PHD_FILE: MSMg01no149_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:52 2005
(531 letters)
>mm_chr2_28252324_28253254
Length = 931
Score = 1011 bits (523), Expect = 0.0
Identities = 529/531 (99%)
Strand = Plus / Plus
Query: 1 cactctgacagcatcccagccagcaagaagcagggctccactggccataaagccatcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctgacagcatcccagccagcaagaagcagggctccactggccataaagccatcact 260
Query: 61 catctcatgactaaaggagacaggcttgccaaggggtggcactagtgaacacagcacaga 120
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 catctcgtgactaaaggagacaggcttgccaaggggtggcactcgtgaacacagcacaga 320
Query: 121 cctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaaga 380
Query: 181 catcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcct 440
Query: 241 ctaacttccttcctctcatgactgggaatgcctgtcactaccctccaaggtgagaagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaacttccttcctctcatgactgggaatgcctgtcactaccctccaaggtgagaagatg 500
Query: 301 tcagggggtggctcccaaacctggatttctcaagcctcctttacctgtatccagccttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagggggtggctcccaaacctggatttctcaagcctcctttacctgtatccagccttca 560
Query: 361 gtctcccactgtggtcttccccagggtcaaaaagagggtactgcccctcatcccaggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcccactgtggtcttccccagggtcaaaaagagggtactgcccctcatcccaggact 620
Query: 421 tctccctggtggccttcaaggcaaagcgcttagccattggtctagtgaccagtgccctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccctggtggccttcaaggcaaagcgcttagccattggtctagtgaccagtgccctcc 680
Query: 481 agaaaaggctgcctcacacctccatgcccttccaagttgctttccagaagt 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaaggctgcctcacacctccatgcccttccaagttgctttccagaagt 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
