BAC Information

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BAC

Clone NameMSMg01-150A13
Chromosome2 (Build37)
Map Location 86,964,195 - 86,964,523
singlet/doubletsinglet
Overlap geneLOC668402
Upstream geneOlfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259
Downstream geneOlfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A13.T7 (MSMg01no150_a13.b1)MSMg01-150A13.TJ (MSMg01no150_a13.g1)
ACCAG352586AG352587
length730732
length of high quality
(start - end)		611 (40 - 650)329 (85 - 413)
definitionCHROMAT_FILE: MSMg01no150_a13.b1 PHD_FILE: MSMg01no150_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005CHROMAT_FILE: MSMg01no150_a13.g1 PHD_FILE: MSMg01no150_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCA
TTAAAAGTCCTCCCAAAAAGCCCAAGATCAGTTGGTTTTAGTGCAGAACT
TCAAAGAAGACCTAATACCAATAGTTGTCAAACTATTTCACAAAATAGAA
ACAGAAGGAATACTACCTAATTCACTCTATAAAACCACAGTCATTCTGAT
ACCTAAGACATACAACAACCCAACAAAGAAAGAGAACTTCAGACAAATTT
CACTTAGGAATATCGTTGCAAAAATACTCAATAAAATTCTTGCAAACAGA
ATGCAATTACACATCAAATGAGTACTCACTACCATCAAATATCTTCAACC
CAGGAATGCAGTAATGGTTCAACATACAAAAATCTTTCAGCATAATCCAC
TATATAAACAAACTCAGAAAACAAGTCACATGGTAATCTCATTAGATGCT
GAAAAAGCCTTCAAGAAAATACAACACACTTTCATGTTAAAAATCTTGGA
AAGATCAGAAAGTCAAAGCACATAACTAAACATATTAAGAACAATATACA
GCAAACCAACACCTAACATCAAATTAAATGGAGAGAAATGTGATACAATC
CCACTAAAATCAAACAAGACAAGGTTGCCCACTCTATTCCTATTAATTCA
ATATAGTAGCCGAAGTTCTAACTAGAGCAATTAGACAACAAAAGTAGGTC
AAAGGGATATAAATTGGAAAGGAAGTAGTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTACAATGGGAAATGTTTTTGAA
AAGTTGTTTGAAAGCCTATTTGGGAAAAAGGAAATGAGGATTCTCATGGT
GGACTTAGATGCAGCTAGAACAATGATGACCTTGTACAAACTGAAGCTGG
GAGAGATTGTGACAACCATCCCTACAATAGGTTTCCATGTGGACACCTTA
GAACATAAAAACATAAGCTTCACTGTCTGGGTTGTTGGTGACCAGGACAA
AAATCAGACCTTTGTGGCAACATTACTTCCTGAATACTCAAGGTCTGATA
TTTGTGGTTTACTGAAATGACAGAGAGCGGGTCAACAAGGCCCGGGAAGA
ATTGACCAGAATGCTACCAGATGATGAGCTCAGAGATGCAGTCTTATTGG
TGTTTGTAAACAAACAGGATCTTCCTAATCCTATGAACACAGCAGAGATC
ACAGACAAGCTTGGCTTACATTTCCTTCATCAGAGAAACTGGTACATTCA
GGCTACCTGTGAGACCAGTGCAGATGAGCTTTACAAAGGCGTGGACTGGT
TCTCCAACCAGCTCAAAAACTGGGAGTGATCAGAAGCAACCCATTCCCCC
ATGCACTGTGGCAAAACCAGCTGGCCTTACCTGTGCATGTGAGCATGTGA
GGAGCCCATGCGGCTGTGTGCCTGGCAGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a13.g1 MSMg01no150_a13.g1 CHROMAT_FILE:
MSMg01no150_a13.g1 PHD_FILE: MSMg01no150_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:29 2005
         (329 letters)



>mm_chr2_86963995_86964723
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaaatgtttttgaaaagttgtttgaaagcctatttgggaaaaaggaaatgaggattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gggaaatgtttttgaaaagttgtttgaaagcctatttgggaaaaaggaaatgaggattct 470

                                                                       
Query: 61  catggtggacttagatgcagctagaacaatgatgaccttgtacaaactgaagctgggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 catggtggacttagatgcagctagaacaatgatgaccttgtacaaactgaagctgggaga 410

                                                                       
Query: 121 gattgtgacaaccatccctacaataggtttccatgtggacaccttagaacataaaaacat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 409 gattgtgacaaccatccctacaataggtttccacgtggacaccttagaacataaaaacat 350

                                                                       
Query: 181 aagcttcactgtctgggttgttggtgaccaggacaaaaatcagacctttgtggcaacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagcttcactgtctgggttgttggtgaccaggacaaaaatcagacctttgtggcaacatt 290

                                                                       
Query: 241 acttcctgaatactcaaggtctgatatttgtggtttactgaaatgacagagagcgggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acttcctgaatactcaaggtctgatatttgtggtttactgaaatgacagagagcgggtca 230

                                        
Query: 301 acaaggcccgggaagaattgaccagaatg 329
           |||||||||||||||||||||||||||||
Sbjct: 229 acaaggcccgggaagaattgaccagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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