Query= MSMg01no150_b08.b1 MSMg01no150_b08.b1 CHROMAT_FILE:
MSMg01no150_b08.b1 PHD_FILE: MSMg01no150_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:33 2005
(626 letters)
>mm_chr2_54307644_54308669
Length = 1026
Score = 1112 bits (575), Expect = 0.0
Identities = 614/627 (97%), Gaps = 2/627 (0%)
Strand = Plus / Minus
Query: 1 ctacacagagaaactgtcttgaaaaaaaaatcatgtaaaagtaaaaaaagaaaaataaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ctacacagagaaactgtcttgaaaaaaaaatcatgtaaaagtaaaaaaagaaaaataaca 767
Query: 61 tttgtcatagattgaatgattattgtgctttacctatcaaatcacatttaaaataataac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 766 tttgtcatagattgaatgattattgtcctttacctatcaaatcacatttaaaataataac 707
Query: 121 acaacagaaaaaaatgacatcgaagaaattaggatatatatttaaaatccaaaactgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acaacagaaaaaaatgacatcgaagaaattaggatatatatttaaaatccaaaactgata 647
Query: 181 aatttataatatacaaagtgaaatggtaatagtttcattatattagtttatgaaagattt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 646 aatttataatatacaaagtgaaatggtaatagtttcactatattagtttatgaaagattt 587
Query: 241 agctaaataccaagttataaagctaaattaagacaaatggaaacatcattgctataaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agctaaataccaagttataaagctaaattaagacaaatggaaacatcattgctataaatc 527
Query: 301 aaaactgaattttcagggactaaagattgtttagatagtagctcatttaaaaaaaaaaaa 360
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 526 aaaactgaattttcagggacaaaagactgtttagatagtagctcattttaaaaaaaaaaa 467
Query: 361 cccactaaagaccattctgaacatctttaaacctaaatttagaacagtggccttttgcac 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 466 cc-actaaagaccattctgaacatctttaaacctaaatttagaacagtggccttttgaac 408
Query: 421 tgcacagcccaattagaagtatagtgtgaatatgacctggaacaaaatggcttttagcct 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgcacagctcaattagaagtatagtgtgaatatgacctggaacaaaatggcttttagcct 348
Query: 481 cctcctggacccacgattgcaataactctgtgataatcgtctttgcaagctacgacagta 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct: 347 cctcctggacccacgattgcaataactctgtgataattgtctttgcaagctactaccgta 288
Query: 541 atttttattttctcatcatattccagaaat-gagacagacaatattagaagcctcatttg 599
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 287 atttttattttctcatcatattccagaaaaagagacagacaatattagaagcctcatttg 228
Query: 600 atagccctttatcctccttaatcaata 626
|||||||||||||||||||||||||||
Sbjct: 227 atagccctttatcctccttaatcaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_b08.g1 MSMg01no150_b08.g1 CHROMAT_FILE:
MSMg01no150_b08.g1 PHD_FILE: MSMg01no150_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:33 2005
(469 letters)
>mm_chr2_54136630_54137498
Length = 869
Score = 774 bits (400), Expect = 0.0
Identities = 448/470 (95%), Gaps = 12/470 (2%)
Strand = Plus / Plus
Query: 1 tttgggtaaagaggacaacaggccacagtggcacactgaatcccaaagtgactggttgtt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggtaaagaggacgacaggccacagtggcacactgaatcccaaagtgactggttgtt 260
Query: 61 taattgtgtgcactgaacaagccattcacttggtgaaatcacaacagtgtacaggcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgtgtgcactgaacaagccattcacttggtgaaatcacaacagtgtacaggcaaag 320
Query: 121 agtatgttggaattgtcctgctgcacaatgctattgaagtagatactcagctttctcagg 180
| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 321 aatatgttggaattgtcc----------tgctattgaagtggatactcagctttctcagg 370
Query: 181 ccctagactgacaggtgccctgttacaataaccccacttattgctgctataaagagacag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 371 ccctagactgacaggtgccctgttacaataaccccacttactgctgctataaagagacag 430
Query: 241 ctatctatgagagcaaaatggtggaatatgaacctgaaagaagatttggaatcttttggg 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctatctatgagatcaaaatggtggaatatgaacctgaaagaagatttggaatcttttggg 490
Query: 301 tg-tgctgtaaagctggcacctatattcaaatgctatgtttgtaccttgtcttgttactg 359
|| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 491 tgct-ctgtaaagctggcacctacattcaaatgctatgtttataccttgtcttgttactg 549
Query: 360 gaagtcagtggtcagatacaggaactttggagagtgtgttctggagtcctgagtgaaaag 419
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaaatcaatggtcagatacaggaactttggagagtgtgttctggagtcctgagtgaaaag 609
Query: 420 gaccacatagtgacaatgtgtgatgtacttgatactcagtggctgtatga 469
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaccacatggtgacaatgtgtgatgtacttgatactcagtggctgtatga 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
