BAC Information

Click to search

BAC

Clone NameMSMg01-150B10
Chromosome2 (Build37)
Map Location 68,840,006 - 68,997,561
singlet/doubletdoublet
Overlap geneLass6, Nostrin
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443
Downstream geneSpc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150B10.T7 (MSMg01no150_b10.b1)MSMg01-150B10.TJ (MSMg01no150_b10.g1)
ACCAG352625AG352626
length723721
length of high quality
(start - end)
608 (42 - 649)471 (70 - 540)
definitionCHROMAT_FILE: MSMg01no150_b10.b1 PHD_FILE: MSMg01no150_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:33 2005CHROMAT_FILE: MSMg01no150_b10.g1 PHD_FILE: MSMg01no150_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:33 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(68,840,006 - 68,840,609)(68,997,092 - 68,997,561)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATGACTTCTATAAAAGTTTTATTATACATAAAAGCCGTCTGATCATT
GCCTACTAACAATAGTCAGGATTGAAACAGCTGTTATAAATCATTTACCA
GAGCGGTTGCAAATTCTCCAGAGGCCAGAAAAGTAAAGCAGATTCTTGCA
GTGTACTGGTTCAATATAATAGGGAGAGAAAGATACTAAAATAAAGGTTA
CCTTAAAGCAGACCAAATCCTTGAATTATCATTATGGAAAACTACTACCT
TACACACATAGGACTGAGGTCAAAGGATATTGACAGATTTGTCCAAAATG
AAAAGATTCCATGGTCTTTATCAGAACTAAATAATAAGCTGCAAGGTCCA
TTCGAGATAAAATGCACCCCTCTGTGCAGTGCTTATTTGGAATTTAGTAT
GGTGCCAGCAAAGCATTACAGGAGCCTGAGCCCTGTGTAACTGTCTCATG
TCCGGGAGGCAGTCTTGGTTTTAGGTTCTAATTGAGAATTTGTATACCAG
GTGCACAGAAAACTCGCAGACACTCACCCATAACCACTAAGACTGCTGAT
CAGGAATGTGTTTTTTGCTGTTCACGTTGTGTGAGTGAACCAGCAGTATG
TATAGTAGGACTTCCTGTGAACATTGGTCACTATTTTCCAGCCTCATTGG
GAGGCTTTTTAAAATGACTCCTG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAGCTTCACAGATCAAGTCACAATCTCTC
TAGAAGGATTAATGTGTTCTTTCCTGCATTTGTTATCTAGCCAACTAGAT
TTTTAAGTAATTGAAAACTAGCCGCAGATCTTAGTGTAGTATGTACAGAA
GCTAGACTGTGTGCTGTTGTAGAATCAACACGTGTATTCCCTTTGACGTC
ACCACACTCCTTACAATAACCTCTCCATTGCAGGGTCTCTAACAACCTTA
CACAAATGGAGAACCAAACTGGTGTTTGTTACTTTTCCTAAATTGTAAAC
TCCACAGAGAGGCAGCCAATATTGCTGGAACAGAGCAGTGACTCCAGAGT
CTAAGAACTTCTACCACTTCATGGTTTAACTATTAACCAGATTCAAAACT
TTAGAAATGACCTTGACAGTGCAAAGTCACATATCACCTCAGTTGTGTGA
TAAAGAGTACATACACATATAGCTCTTGGCACATAAGTGGCATGTAAATC
TTAGCCATAAATAATAACCATATTTTGAGTCATCCTCTGCTTTGGATGAT
GCATCTGTACAATAACTCAGGTGAGTTGTTTTCTCTTCAATAGGTGCATA
GAAAAGCATGAGAACACATAAAGAGATGCGCACAAAAGCAGAGTCCCAGC
CTAAAAACTGACTCTATGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_b10.b1 MSMg01no150_b10.b1 CHROMAT_FILE:
MSMg01no150_b10.b1 PHD_FILE: MSMg01no150_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:33 2005
         (608 letters)



>mm_chr2_68839802_68840809
          Length = 1008

 Score = 1075 bits (556), Expect = 0.0
 Identities = 592/604 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgacttctataaaagttttattatacataaaagccgtctgatcattgccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgacttctataaaagttttattatacataaaagccgtctgatcattgccta 264

                                                                       
Query: 65  ctaacaatagtcaggattgaaacagctgttataaatcatttaccagagcggttgcaaatt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaacaatagtcagaattgaaacagctgttataaatcatttaccagagcggttgcaaatt 324

                                                                       
Query: 125 ctccagaggccagaaaagtaaagcagattcttgcagtgtactggttcaatataataggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccagaggccagaaaagtaaagcagattcttgcagtgtactggttcaatataataggga 384

                                                                       
Query: 185 gagaaagatactaaaataaaggttaccttaaagcagaccaaatccttgaattatcattat 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 gagaaagatactaaaataaaggttaccctaaagcagaccaaatccttgaattatcattat 444

                                                                       
Query: 245 ggaaaactactaccttacacacataggactgaggtcaaaggatattgacagatttgtcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaaactactaccttacacacataggactgaggtcaaaggatattgacagatttgtcca 504

                                                                       
Query: 305 aaatgaaaagattccatggtctttatcagaactaaataataagctgcaaggtccattcga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgaaaagattccatggtctttatcagaactaaataataagctgcaaggtccattcga 564

                                                                       
Query: 365 gataaaatgcacccctctgtgcagtgcttatttggaatttagtatggtgccagcaaagca 424
           ||||||||| |   ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 gataaaatggagggctctgtgcagtgcttatttggaattcagtatggtgccagcaaagca 624

                                                                       
Query: 425 ttacaggagcctgagccctgtgtaactgtctcatgtccgggaggcagtcttggttttagg 484
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 ttacacgagcctgagccctgtgtaactgtctcatgtccggggggcagtcttggttttagg 684

                                                                       
Query: 485 ttctaattgagaatttgtataccaggtgcacagaaaactcgcagacactcacccataacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctaattgagaatttgtataccaggtgcacagaaaactcgcagacactcacccataacc 744

                                                                       
Query: 545 actaagactgctgatcaggaatgtgttttttgctgttcacgttgtgtgagtgaaccagca 604
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 745 actaagactgctgatcagggatgtggtttttgctgttcacgttgtgtgagtgagccagca 804

               
Query: 605 gtat 608
           ||||
Sbjct: 805 gtat 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_b10.g1 MSMg01no150_b10.g1 CHROMAT_FILE:
MSMg01no150_b10.g1 PHD_FILE: MSMg01no150_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:33 2005
         (471 letters)



>mm_chr2_68996892_68997762
          Length = 871

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagcttcacagatcaagtcacaatctctctagaaggattaatgtgttctttcctgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctagcttcacagatcaagtcacaatctctctagaaggattaatgtgttctttcctgcat 611

                                                                       
Query: 61  ttgttatctagccaactagatttttaagtaattgaaaactagccgcagatcttagtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttgttatctagccaactagatttttaagtaattgaaaactagccgcagatcttagtgtag 551

                                                                       
Query: 121 tatgtacagaagctagactgtgtgctgttgtagaatcaacacgtgtattccctttgacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatgtacagaagctagactgtgtgctgttgtagaatcaacacgtgtattccctttgacgt 491

                                                                       
Query: 181 caccacactccttacaataacctctccattgcagggtctctaacaaccttacacaaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caccacactccttacaataacctctccattgcagggtctctaacaaccttacacaaatgg 431

                                                                       
Query: 241 agaaccaaactggtgtttgttacttttcctaaattgtaaactccacagagaggcagccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agaaccaaactggtgtttgttacttttcctaaattgtaaactccacagagaggcagccaa 371

                                                                       
Query: 301 tattgctggaacagagcagtgactccagagtctaagaacttctaccacttcatggtttaa 360
           ||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 370 tattgctgggacagagcagtgactccagagtctaagaacttctaagacttcatggtttaa 311

                                                                       
Query: 361 ctattaaccagattcaaaactttagaaatgaccttgacagtgcaaagtcacatatcacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctattaaccagattcaaaactttagaaatgaccttgacagtgcaaagtcacatatcacct 251

                                                             
Query: 421 cagttgtgtgataaagagtacatacacatatagctcttggcacataagtg 470
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 250 cagttgtgtgataaagagtacacacacatatagctcttggcacataagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)