BAC Information

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BAC

Clone NameMSMg01-150F10
Chromosome2 (Build37)
Map Location 113,801,097 - 113,801,544
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr3, 4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526
Downstream geneGja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150F10.T7 (MSMg01no150_f10.b1)MSMg01-150F10.TJ (MSMg01no150_f10.g1)
ACCAG352806AG352807
length732731
length of high quality
(start - end)
475 (68 - 542)---
definitionCHROMAT_FILE: MSMg01no150_f10.b1 PHD_FILE: MSMg01no150_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:52 2005CHROMAT_FILE: MSMg01no150_f10.g1 PHD_FILE: MSMg01no150_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGGATCCGCGGAAT
TCAAGACTATTCCGTGCTATATCATAAACTACAGGTCATCTGGGGTTACA
GAGGAAGATCATGTCTAAAACCACCACCACCACCACCAACAGCAACAGCA
ACAGCAAAAACGGATTGAGATTAGGGTTGGCAAAGTGACCCAGTGGGTAC
TTGCTTGCCTAGGATGATAACCTGAGTTCCTTCCCTGGGATTCACATGGT
AGAAACAGTGAATCTCAAAAGTCATCCTATGACCTCTAAATACCTGCACA
CATATACACATACAAATAATTTTTTTTAAAAACAAGACCCAACAAATCCC
CTTTCATTGAGATGACCACAATGAGCGCTGGAAGATGCCCTCCTTCCAAG
GCAATTATATCCACCTTCCCTTACCAAGCCTTCCTGCCAAGTCCTCATCA
AATCCTATCTTGTAGTCAGAGTTTCTTTAAGTTTTTGCCTTTTTAATATT
TATCTTTTAATGAGTCACTCTCATCTCAGAAAGCCTTTAGCCTTAGTTCC
CCAAGGAGACTGTGAGTATTTGGAGAGGACCATAGATGGAGGTATCTAGG
AAGAAAGATGCATTGAGGGCACATAAACGATTTCCCAAAAGCGCAATGGT
TATAAAAACGGTTTACAGATGAACAAACCCAAATTGTATAATTTTAAGAA
CCGCCTAGCAAACTCTTGCGCTTTGGCATGCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTAGCGTTGAGCAATGAGATACAGTACCAC
TAAAAGGAGAGATGGGAGCCTTTCCGTATGTCTCAGCAGCCATCGTTTTC
CGGTATATCAAAGAGAGACAGAGAATAGAGCATCTTGATAGAAGTGGAGA
AGAGCCAATGTTGGCAGGTGTGAAATAGTGTAGGGTGGGACTTCCGTGTT
GATCCCAATATTGTAAATGCCAATCTTGTTTGAGACCCTTATGTCACTAT
TAGACAACATACTGACCATTCTTAGGATTGATCCATATAGAGAACTCAGT
TGTTTTCGGACAGACACCTAATGTAGCTGGGAGTGTTCCGGAAAGATGGA
TCCTCAGATAAACGCACACCCTGAGCTTGAAGAGGAACAGGGCATCCACA
ATACAGCTAAGCCGTGGAACGTGCTATGACTTCCAGAGGATCTGGTGACT
GCTTCCAGGCTCTACGAGTATATTTTTACGATTAACCCGGGACAGGAATA
CATTGAACGAAAATACTTCCCCTATCGAAGAGTGACCGACTTTCCTGGAT
GTAGCAACGCACCAAATCATACAGCAGCTGAGGTTGCAATTCAATGTGGG
GCGTAATAAATTCGTTGGATTCCTGAAGGTTCTAGCACCGAAAAAACAAT
TCCTCAGTCCTTTGTCACGAGGTACTTCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_f10.b1 MSMg01no150_f10.b1 CHROMAT_FILE:
MSMg01no150_f10.b1 PHD_FILE: MSMg01no150_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:52 2005
         (475 letters)



>mm_chr2_113800897_113801771
          Length = 875

 Score =  820 bits (424), Expect = 0.0
 Identities = 442/448 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatcataaactacaggtcatctggggttacagaggaagatcatgtctaaaaccaccac 60
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tatatcataaactacaggtcatgtggagttacagaggaagatcatgtctaaaaccaccac 260

                                                                       
Query: 61  caccaccaccaacagcaacagcaacagcaaaaacggattgagattagggttggcaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccaccaccaacagcaacagcaacagcaaaaacggattgagattagggttggcaaagtg 320

                                                                       
Query: 121 acccagtgggtacttgcttgcctaggatgataacctgagttccttccctgggattcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccagtgggtacttgcttgcctaggatgataacctgagttccttccctgggattcacat 380

                                                                       
Query: 181 ggtagaaacagtgaatctcaaaagtcatcctatgacctctaaatacctgcacacatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagaaacagtgaatctcaaaagtcatcctatgacctctaaatacctgcacacatatac 440

                                                                       
Query: 241 acatacaaataattttttttaaaaacaagacccaacaaatcccctttcattgagatgacc 300
           |||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatacaaataaatccatttaaaaacaagacccaacaaatcccctttcattgagatgacc 500

                                                                       
Query: 301 acaatgagcgctggaagatgccctccttccaaggcaattatatccaccttcccttaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgagcgctggaagatgccctccttccaaggcaattatatccaccttcccttaccaa 560

                                                                       
Query: 361 gccttcctgccaagtcctcatcaaatcctatcttgtagtcagagtttctttaagtttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccttcctgccaagtcctcatcaaatcctatcttgtagtcagagtttctttaagtttttg 620

                                       
Query: 421 cctttttaatatttatcttttaatgagt 448
           ||||||||||||||||||||||||||||
Sbjct: 621 cctttttaatatttatcttttaatgagt 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)