Query= MSMg01no150_g19.b1 MSMg01no150_g19.b1 CHROMAT_FILE:
MSMg01no150_g19.b1 PHD_FILE: MSMg01no150_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:58 2005
(526 letters)
>mm_chr2_28739795_28740719
Length = 925
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 1 ctcaagcttaagtgacaggtgacttgcttctgtgtcacaactgtcaggggatttagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctcaagcttaagtgacaggtgacttgcttctgtgtcacaactgtcaggggatttagtgat 666
Query: 61 aatatggcaatatattacaaagggcttttcttattcccccctttaggtttcaaaatgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aatatggcaatatattacaaagggcttttcttattcccccctttaggtttcaaaatgagg 606
Query: 121 catcttttcttcccaaccaaaaaaaaattacatatatataatgtgagtgtatatacaagt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catcttttcttcccaacc-aaaaaaaattacatatatataatgtgagtgtatatacaagt 547
Query: 181 gaaatgtgtagaaaatgataaaatcaggctcacacagttaaaatgatgaggtcagtttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaatgtgtagaaaatgataaaatcaggctcacacagttaaaatgatgaggtcagtttta 487
Query: 241 gagaaacgtatgaaaaagttaatgacagaaaacaatgcatttaggaaaaagcatctccta 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagaaacgtaagaaaaagttaatgacagaaaacaatgcatttaggaaaaagcatctccta 427
Query: 301 ccaccacttgcagaaacactgctaagactgcccctcctgagactgaacgaggtaattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaccacttgcagaaacactgctaagactgcccctcctgagactgaacgaggtaattttt 367
Query: 361 ggttgtggggaggacagtctaaatttaaactgaagacagaatggggcagagttcggtagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 366 ggttgtggggaggacagtctaaatttaaactgaagacagaatggggcagagttcggcagt 307
Query: 421 gccacctcagccttagacaggtaaacgctcctgtaatgagagcgggtcagagcccccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gccacctcagccttagacaggtaaacgctcctgtaatgagagcgggtcagagcccccagg 247
Query: 481 cttgtgagcaggcagtactgcctctcccaccctcacagacacaggc 526
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 246 cttgtgagcaggcagcactgcctctcccaccctcacagacacaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_g19.g1 MSMg01no150_g19.g1 CHROMAT_FILE:
MSMg01no150_g19.g1 PHD_FILE: MSMg01no150_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:58 2005
(439 letters)
>mm_chr2_28629057_28629895
Length = 839
Score = 830 bits (429), Expect = 0.0
Identities = 438/443 (98%), Gaps = 4/443 (0%)
Strand = Plus / Plus
Query: 1 cacacccagctaattctgcaaacatttaaatcctggaatattttgctgtaatgtgaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacccagctaattctgcaaacatttaaatcctggaatattttgctgtaatgtgaaatc 260
Query: 61 tagaactgaattggcaggtggttcatagtcctggctctcttggttttatctcaaggcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaactgaattggcaggtggttcatagtcctggctctcttggttttatctcaaggcttg 320
Query: 121 ttactgttcattccctgtgccacgtgcctttagagaacaacagactgaagcccttggata 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactgttcattccctgcgccacgtgcctttagagaacaacagactgaagcccttggata 380
Query: 181 aggacagggccaaagtaaggatgctatcatccttaagagggcagtagtaagagcaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacagggccaaagtaaggatgctatcatccttaagagggcagtagtaagagcaaagaa 440
Query: 241 aaattaaaatgcaaagtagaattgcttgtgcgaagcacatgtgcttgctctctctctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattaaaatgcaaagtagaattgcttgtgcgaagcacatgtgcttgctctctctctctc 500
Query: 301 tctctctctctctctctctctctctctctctctctctctctctctc----ctcattatca 356
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tctctctctctctctctctctctctctctctctctctctctctctctctcctcattatca 560
Query: 357 cttggtccttccaggaagctctcacatctccgcagctcatccttatgtggattagggata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggtccttccaggaagctctcacatctccgcagctcatccttatgtggattagggata 620
Query: 417 ataaacagcccattaatgaaggc 439
|||||||||||||||||||||||
Sbjct: 621 ataaacagcccattaatgaaggc 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
