Query= MSMg01no150_i24.b1 MSMg01no150_i24.b1 CHROMAT_FILE:
MSMg01no150_i24.b1 PHD_FILE: MSMg01no150_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:09 2005
(473 letters)
>mm_chr2_164035147_164036019
Length = 873
Score = 308 bits (159), Expect = 7e-88
Identities = 176/183 (96%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 1 aaagatgaaagcttataaataatgtatacatttcctttctcgcctctgtctttttttttg 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaagatgaaagcttataaataatttatacatttcctttctcccctctgtctttttttttg 260
Query: 61 agacaggtttcccctgcctgatgttaaaagcctggccaacactcaaggccattggggttg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaggtttcccctgcctggtgttaaaagcctggccaacactcaaggccattggggttg 320
Query: 121 gtctagagatgctaattacttagccccaagatctgcttact---gtccaacgagcagatt 177
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 321 gtctagagatgctaattacttagccccaagatgtgcttactactgtccaacgagcagatt 380
Query: 178 ctt 180
|||
Sbjct: 381 ctt 383
Score = 126 bits (65), Expect = 4e-33
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 409 ccaacgagcagattcttgtgcatacaaaatgatgtgtaaactttgccttccaagttatcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccaacgagcagattcttgtgcatacaaaatgatgtgtaaactttgccttccaagttatcc 426
Query: 469 ctgat 473
|||||
Sbjct: 427 ctgat 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_i24.g1 MSMg01no150_i24.g1 CHROMAT_FILE:
MSMg01no150_i24.g1 PHD_FILE: MSMg01no150_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:09 2005
(334 letters)
>mm_chr2_164182323_164183056
Length = 734
Score = 638 bits (330), Expect = 0.0
Identities = 333/334 (99%)
Strand = Plus / Minus
Query: 1 ctttaacaagtcaaaggacaccacagctccacgctgattgcagcgatgagtaagaggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctttaacaagtcaaaggacaccacagctccacgctgattgcagcgatgagtaagaggccc 475
Query: 61 tgtctctttcctccagtccgcttcagtgatctctattagccattgatgcaattcattcat 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtctctttcctccagtccgcatcagtgatctctattagccattgatgcaattcattcat 415
Query: 121 tactttaagggtcattttaagcccttaatcttaaaaccagtcccaagttgtttcacgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tactttaagggtcattttaagcccttaatcttaaaaccagtcccaagttgtttcacgact 355
Query: 181 aagagactgagctccaacaaggttggctgaaggcaaggcccttctgtgtgtaactttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagagactgagctccaacaaggttggctgaaggcaaggcccttctgtgtgtaactttcat 295
Query: 241 ttgtttagggattgctttccaggttccagtcatggaatgggcaccgggcaaacagcggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgtttagggattgctttccaggttccagtcatggaatgggcaccgggcaaacagcggtg 235
Query: 301 caaatgatttggcagaaatcaacatcagttggtt 334
||||||||||||||||||||||||||||||||||
Sbjct: 234 caaatgatttggcagaaatcaacatcagttggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
