BAC Information

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BAC

Clone NameMSMg01-150M03
Chromosome2 (Build37)
Map Location 117,506,860 - 117,507,438
singlet/doubletsinglet
Overlap genenone
Upstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M03.T7 (MSMg01no150_m03.b1)MSMg01-150M03.TJ (MSMg01no150_m03.g1)
ACCAG353109AG353110
length718729
length of high quality
(start - end)
363 (40 - 402)580 (74 - 653)
definitionCHROMAT_FILE: MSMg01no150_m03.b1 PHD_FILE: MSMg01no150_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005CHROMAT_FILE: MSMg01no150_m03.g1 PHD_FILE: MSMg01no150_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATTTTCTGGA
GTCTACCCTCTTGAGTTCTTTATATATATATATTGGATATTAGTCCCCTA
TCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGATCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGTAGTTTCATGA
GGTCCCATTTGTCGATTCTCGATTTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTTCCCTGTGCCCATATCTTCGAGGCTTTTCCCAACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACCAGGAGATAAGTATGGATCGATTCTCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAACATGCT
GTCTTTCTTCCACTGGATGGCTTTAGCTCCTTTGCCTCAGATCGACCAAC
CCTAGGTGTGTGGTCCCATCTCTGCGTTTTCCCCTCCATTCCCTCCGGTC
CCTCGCCCGTTTTTCCCCCCCCCTCCCTGCTTTTTTCCCCCCTTTTTTTT
TTCTCCCCCCCCTTTTACTTCCCCTTGTTCGCCCCCCTCATGACCCTCCT
CCTCCCCCCCGCCTCATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGACTGCTGAATGTGACTTCTGTGTT
ACCGCCCTCTTCAAGACAAGATGAAAGGAGTGACAAATTTCAAACCAGTC
AAAACTTTCAGAACAAGTGACATCAAAACCTCTGGTTTATACCATCCCTG
TGGACTCTAGAACAAGAGTTGGGCCTCCAACACTTCAAGCAATCTTGTCT
CATGCTTTGTGGCTCTCAATTCATGAAGTACCCTTCATGTGTTGGAGTCT
CATGCCTGTATCTTCCTCAAGCTGGCTTATAATGCTGGCAGCTCTCTACT
CCTGAGGTCTTGGTGGAAGCTCTCCACTAAGTTCTAGAAAGGACAGGGTG
TCTCAAGTACATCCTTAGAGATCTCAGTAAAGTCAGCCATGCTACAAACA
ACCTGTGTGTTTGAGGAGTTAGTACTATGTGGACACATCTCAGTTTCATT
GCCCTCTGCCTTGTGGAGTGGCAACCTGAGTTGCATTTGGCCACAGCTGG
AGGAGCTGAAAGTCATTACAGTGGAATTTAGGAAGCAAAAGCTTCGGGAT
GTTTTGGGATCCCACAGGCTCTTTTGTCCCTTCATTTGGAGTTTGTAATT
ACTGGTGATGCTGGGCACTCTGGTCTATTGTAGGAGGAGCAACCTGAAAG
ACTTCTGACATGCCTTTGGATCTCCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m03.g1 MSMg01no150_m03.g1 CHROMAT_FILE:
MSMg01no150_m03.g1 PHD_FILE: MSMg01no150_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:24 2005
         (580 letters)



>mm_chr2_117506659_117507638
          Length = 980

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%), Gaps = 1/580 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactgctgaatgtgacttctgtgttaccgccctcttcaagacaagatgaaaggagtga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 atgactgctgaatgtgacttctgtgttaccgccctcttcaagacaagatgaaagaagtga 261

                                                                       
Query: 61  caaatttcaaaccagtcaaaactttcagaacaagtgacatcaaaacctctggtttatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaatttcaaaccagtcaaaactttcagaacaagtgacatcaaaacctctggtttatacc 321

                                                                       
Query: 121 atccctgtggactctagaacaagagttgggcctccaacacttcaagcaatcttgtctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atccctgtggactctagaacaagagttgggcctccaacacttcaagcaatcttgtctcat 381

                                                                       
Query: 181 gctttgtggctctcaattcatgaagtacccttcatgtgttggagtctcatgcctgtatct 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 gctttgtggctctcaattcatgaagtacccttcatgtgttagagtctcatgcctgtatct 441

                                                                       
Query: 241 tcctcaagctggcttataatgctggcagctctctactcctgaggtcttggtggaagctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcctcaagctggcttataatgctggcagctctctactcctgaggtcttggtggaagctct 501

                                                                       
Query: 301 ccactaagttctagaaaggacagggtgtctcaagtacatccttagagatctcagtaaagt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 ccactaagttctagaaaggacaggg-gtctcaagtacatccttagagatctcagtaaagt 560

                                                                       
Query: 361 cagccatgctacaaacaacctgtgtgtttgaggagttagtactatgtggacacatctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagccatgctacaaacaacctgtgtgtttgaggagttagtactatgtggacacatctcag 620

                                                                       
Query: 421 tttcattgccctctgccttgtggagtggcaacctgagttgcatttggccacagctggagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcattgccctctgccttgtggagtggcaacctgagttgcatttggccacagctggagg 680

                                                                       
Query: 481 agctgaaagtcattacagtggaatttaggaagcaaaagcttcgggatgttttgggatccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctgaaagtcattacagtggaatttaggaagcaaaagcttcgggatgttttgggatccc 740

                                                   
Query: 541 acaggctcttttgtcccttcatttggagtttgtaattact 580
           |||||||||||||||||||||| ||||||||||| |||||
Sbjct: 741 acaggctcttttgtcccttcatatggagtttgtatttact 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)