Query= MSMg01no150_o04.b1 MSMg01no150_o04.b1 CHROMAT_FILE:
MSMg01no150_o04.b1 PHD_FILE: MSMg01no150_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:33 2005
(486 letters)
>mm_chr2_10374823_10375708
Length = 886
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%)
Strand = Plus / Plus
Query: 1 cagaaaaattacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaaattacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagttcag 260
Query: 61 atagccctgttatgtcctcacattcctctttatcttatggtcaagcttttcccaggaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagccctgttatgtcctcacattcctctttatcttatggtcaagcttttcccaggaatg 320
Query: 121 ttttaatacggggcatacccgggtttgtttttcttttttttttcttagccccaggcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaatacggggcatacccgggtttgtttttcttttttttttcttagccccaggcagcc 380
Query: 181 tctaggctcacaaacaaccagcaagttctgagtactttatatgacttacaggtcttgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggctcacaaacaaccagcaagttctgagtactttatatgacttacaggtcttgaaa 440
Query: 241 tttcatcttcctttcactagaggctgaatccttggggagttgtgacttatagtcatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcatcttcctttcactagaggctgaatccttggggagttgtgacttatagtcatgaaa 500
Query: 301 ggggtgtatagacagtcacctgaccaccacattgttccttgctgactcctccctccttga 360
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 501 ggggtgtatagacagtcacctgagtaggacattgttccttgctgactcctccctccttga 560
Query: 361 gaggtggtgctgctactggaagatagttcggaatttgtctcctgtttccatggcaacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggtggtgctgctactggaagatagttcggaatttgtctcctgtttccatggcaacagt 620
Query: 421 ggagttgcatttagggcatccagctgaaggggtgggtctggttaattgtgtcttccaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagttgcatttagggcatccagctgaaggggtgggtctggttaattgtgtcttccaagg 680
Query: 481 tggcta 486
||||||
Sbjct: 681 tggcta 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_o04.g1 MSMg01no150_o04.g1 CHROMAT_FILE:
MSMg01no150_o04.g1 PHD_FILE: MSMg01no150_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:33 2005
(344 letters)
>mm_chr2_10435992_10436735
Length = 744
Score = 640 bits (331), Expect = 0.0
Identities = 337/341 (98%), Gaps = 4/341 (1%)
Strand = Plus / Minus
Query: 1 aattcctctgtgtgtgagagtgtatgtgcttgcatttgtgtgtgtgtgtgcgtgcgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aattcctctgtgtgtgagagtgtatgtgcttgcatttgtgtgtgtgtgtgcgtgcgtatg 574
Query: 61 atatatatattcacatacacacaagcacatgcacacacaaatatacacacatggacatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atatatatattcacatacacacaagcacatgcacacacaaatatacacacatggacatac 514
Query: 121 atggctgagaatcacatgaatcacaggctgatcttaaaatcatcatgaagttaagcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atggctgagaatcacatgaatcacaggctgatcttaaaatcatcatgaagttaagcatga 454
Query: 181 atttgaactcctaaaactcctgattccagcatacattttgacctggagagtgagatcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atttgaactcctaaaactcctgattccagcatacattttgacctggagagtgagatcacg 394
Query: 241 cactgtcccagaactgcataatctctaaaactctaagtgacatatcattcaaatggatcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cactgtcccagaactgcataatctctaaaactctaagtgacatatcattcaaatggatcg 334
Query: 301 atgagtgtcatttgtgtgtgtgtgtgtgtgtgtgccgcatg 341
|||||||||||| |||||||||||||||||||||||||
Sbjct: 333 atgagtgtcatt----tgtgtgtgtgtgtgtgtgccgcatg 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
