BAC Information

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BAC

Clone NameMSMg01-151A01
Chromosome2 (Build37)
Map Location 113,066,490 - 113,067,064
singlet/doubletsinglet
Overlap genenone
Upstream geneAgpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A01.T7 (MSMg01no151_a01.b1)MSMg01-151A01.TJ (MSMg01no151_a01.g1)
ACCAG353288AG353289
length732735
length of high quality
(start - end)
579 (43 - 621)42 (94 - 135)
definitionCHROMAT_FILE: MSMg01no151_a01.b1 PHD_FILE: MSMg01no151_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005CHROMAT_FILE: MSMg01no151_a01.g1 PHD_FILE: MSMg01no151_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTTTGTCTATTTGTTTGAACTAGAGATTTCTAATCCTACTGATTTGG
TTTAGCTGTGACATCAGAAAGGATGTCAATCCCATGTTGGCTGAGAAACC
TCATAGAGGTTCTAACAACTTTGTAAGTCCTAATTGCATTGGATCTTCCT
TAATGTACTAAATTTTTAGTCTGTTTTTAGAACTAAGTTTCAAATTATCA
AGGCAGAAATTAACTTTTTTTTCCCTTGACTTCAAATTACTACATAGAAG
ATGCCATGAACTACGTGCCAAAGATTGTTTCTCAGATTCCGGGGTTTGGT
AAAGGAGACTCAGGGATATCACCTGGAATGAGAGGACGAGGCTCCTCATG
AAAAATCCTGGGCTCATTGCCCCCATTTCTCCCCTACTTTCATCCAGAGC
ATCCTGCCCTCATGTCTTGTCTTTGCATGTTAGTATAATGAGGACCGTGC
CATGTTTATTCACACGGTGTTTCTGAGGACCTCACCATCATAGGGTATTT
ATCAGCCCAGTTTGCAATTGCCCAATGGCTTGCTCTGTCAACTGAAACAG
CCTAAATGTGCTAGAGAATTAGCACCGGTGGGAGCAGCTTTCACCCACTG
ACTGACCAGAGGTACTTTATAAATAGCCCAGCTTCCTTGTTCTTCCTGGG
AACGATTTTGAGAAGCCTATTTGACACGAGTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGTAATCTCAAATGGCCG
AAAAACACTTGAAATGTTCCACATCCTTAGTCATCAGGAAATGCCAATCA
AAATGACCCTGAGATTCCCACTCATACCAGTCAGAATGGCTAAGATCAAA
AACCCAGGTGACGGCAGATGTTGACCAGGATGTGGAGAAAGAGGAACCCT
CTTCCATTGTTGTTGTGATTACAAACTGGTACAACCATTCTGGAAATCAG
TCTGGCAGTTCTTCACAAAAATGGACATAATACTACCTGAGGCCCCAGTC
ATACCCCTCCTAGGCCTATACCCAAAAGATGCTTCAACATATAACAAGGA
CACGTGCTCCACTCCGCTCATAGCCGCCTTATTTATAATAGCCAGAAACT
GCAAGCAGCCCCAGATGTTTCTCAACAGAACAATGGATACCGAACATGCG
GTCTATATACCTAATGCCGTACCTACCCAGAGATTAACAACAATGACTTC
CTGAAATTCCTAGGCACATACACAGAACTAGACAATCTCATCCTGATCGA
GGTAACCCCCACACAAAAGACCCCCCATGATATACACTCCCTTTTACCTG
CATACCTACCCCCAAGCTCACCACGCCCATGATACCACCCCATACACCCT
ATGGACTATACACACCAAGGAAACATTGCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a01.b1 MSMg01no151_a01.b1 CHROMAT_FILE:
MSMg01no151_a01.b1 PHD_FILE: MSMg01no151_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:42 2005
         (579 letters)



>mm_chr2_113066286_113067264
          Length = 979

 Score = 1029 bits (532), Expect = 0.0
 Identities = 565/576 (98%), Gaps = 2/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttttgtctatttgtttgaactagagatttctaatcctactgatttggtttagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattccttttgtctatttgtttgaactagagatttctaatcctactgatttggtttagc 720

                                                                       
Query: 65  tgtgacatcagaaaggatgtcaatcccatgttggctgagaaacc-tcatagaggttctaa 123
           ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct: 719 tgtgacatcagaaaggatgacaatcccatgttggctgagaaaccgt-atagaggttctaa 661

                                                                       
Query: 124 caactttgtaagtcctaattgcattggatcttccttaatgtactaaatttttagtctgtt 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caactttgtaagtcctaactgcattggatcttccttaatgtactaaatttttagtctgtt 601

                                                                       
Query: 184 tttagaactaagtttcaaattatcaaggcagaaattaacttttttttcccttgacttcaa 243
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 600 tttagaactaagtttcaatttatcaaggcagaaattaactttttttccccttgacttcaa 541

                                                                       
Query: 244 attactacatagaagatgccatgaactacgtgccaaagattgtttctcagattccggggt 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 attactacatagaagatgccatgaactacgtgccaaagattgtttctcagattctggggt 481

                                                                       
Query: 304 ttggtaaaggagactcagggatatcacctggaatgagaggacgaggctcctcatgaaaaa 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 480 ttggtaaaggagactcagggatatcacctggaatgagaggacaaggctcctcatgaaaaa 421

                                                                       
Query: 364 tcctgggctcattgcccccatttctcccctactttcatccagagcatcctgccctcatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcctgggctcattgcccccatttctcccctactttcatccagagcatcctgccctcatgt 361

                                                                       
Query: 424 cttgtctttgcatgttagtataatgaggaccgtgccatgtttattcacacggtgtttctg 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 360 cttgtctttgcatgttagtataatgaggaccgtgccatgtttattcacactgtgtttctg 301

                                                                       
Query: 484 aggacctcaccatcatagggtatttatcagcccagtttgcaattgcccaatggcttgctc 543
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggacctcaccatcatggggtacttatcagcccagtttgcaattgcccaatggcttgctc 241

                                               
Query: 544 tgtcaactgaaacagcctaaatgtgctagagaatta 579
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgtcaactgaaacagcctaaatgtgctagagaatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)