BAC Information

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BAC

Clone NameMSMg01-151B11
Chromosome2 (Build37)
Map Location 170,229,633 - 170,229,893
singlet/doubletsinglet
Overlap geneBcas1
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739
Downstream geneLOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B11.T7 (MSMg01no151_b11.b1)MSMg01-151B11.TJ (MSMg01no151_b11.g1)
ACCAG353351AG353352
length722722
length of high quality
(start - end)
266 (46 - 311)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no151_b11.b1 PHD_FILE: MSMg01no151_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005CHROMAT_FILE: MSMg01no151_b11.g1 PHD_FILE: MSMg01no151_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGC
GGAATTCCAAACCCACTTAGGAGGACTCAGTGGTAGTGGGGGTGGAGGCA
GGGAACTGTGGGGGATGGGAGACGGGGAGGGACAGCTGACTCGGCAGAAC
CCAAGGCTTCATTTACCAGGAAGAATTCTGAGTCAATGCTGGTCAACTGC
ATCCTGGCGGTACTCTAGATCCAAGAGAATGTTACTGATTGGGAAGTTTT
ATTCATGTTATTTTCTGAGGGCTGTGTTTTCTCACTCTACTAAGAAACAA
ACAAACAAACAAACTTTTTTTTCAAACCAATGGTTTTCCCCCAAACACTG
AAGTAGGCCATAGGAGCCCGATGGAAAACCTTGACCGATCAGAGGGGTTT
CTTTTCTTTTTTTCACCCCCCCAGCTTTTAATAAATCCTTGTGCATATAT
ATGCATTCATATATCCATGTGTTTGTAGGCTGAGGGTGAAACGGATATCT
CATACTACGTATAATAAATGTTGTAGACCTGCTCGGTACTAGATAGACTA
CATTTCACACTTCCGTGATACCCGCCATTCAAGCATGGATATTTGTAGGG
TATCCCTAGCTGAGTTATTCACCTTTCTTGGTACCGGTTGCCAAAAGGGT
CCCTTATCCAGGAAATAAAACATGTTCTAACTGATGGTGGGGCCTTCCGA
AAAAATGGCTTCGCCCTGCGAN
CACGATTGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAGAAAAATTCCATGAAACCATGAATTCATCTAA
GCAGCATGAGCTCATGAAAGTTTATCTTCATGTTGATCTGCGGGAAACTT
GCCCAACATCGTGGGGATATCACACCCAGGAAGCAATCACACCAGGCTAT
AGGCAGTGAGGGGTCCCACCCCCCAACCCACGCCACACACACACACTCAC
TCCATGCCAGGCCTATGAGGAACGACAAACATTAGAAGACATGGCAGCAA
CCCTGAGACATGGCCCCTGTTTTCGTGTGTCTCCAGGGTATGCCCATTAG
TGCTGAGCAGAACAGTGAGTCTTCTCCAGGAAGCTCACTTGCCCACTGCA
GCTCTTTCTGCATGGCATCCTGCCAGCGTGTCTTGTTTCCTCCTTTTTCT
TAGAGTTAATGAGCAATGATTCCCGGAGAGAAGCTGTGTCTTCGAGGGCT
AATTAGACCTCGTGCTATGGAGAGGCTGAAATGGTGCAGGTCCCGAGGCT
AATTACCATCTTTTGGGCTAGCTTCAGCCCCATGAACAGCTTTGCCCACC
TCTTTGGAGGAACTAACATCCTAATAGGGAATGGCCTTTGGGAATCTATT
AACATAGCAAACCACTTGCTTCCACCAACCAAAAGTTAAGTTTTCAGATA
GCATCTATAGTCTCTAGAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b11.b1 MSMg01no151_b11.b1 CHROMAT_FILE:
MSMg01no151_b11.b1 PHD_FILE: MSMg01no151_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:49 2005
         (266 letters)



>mm_chr2_170229428_170230093
          Length = 666

 Score =  445 bits (230), Expect = e-129
 Identities = 254/262 (96%), Gaps = 2/262 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccaaaccca-cttaggaggactcagtggtagtgggggtggaggcagggaactgt 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccaaacccagc-taggaggactcagtggtagtgggggtggaggcagggaactgt 264

                                                                       
Query: 65  gggggatgggagacggggagggacagctgactcggcagaacccaaggcttcatttaccag 124
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 gggggatgggagagggggagggacagctgactcggcagaacccaaggcttcatttacccg 324

                                                                       
Query: 125 gaagaattctgagtcaatgctggtcaactgcatcctggcggtactctagatccaagagaa 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gaagaattctgagtcaatgctggtcaactgcaccctggcggtactctagatccaagagaa 384

                                                                       
Query: 185 tgttactgattgggaagttttattcatgttattttctgagggctgtgttttctcactcta 244
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 385 tgttactgattgggaagttttattcatgttattttctgagagctgttttttctcactcta 444

                                 
Query: 245 ctaagaaacaaacaaacaaaca 266
           |||| |||||||||||||||||
Sbjct: 445 ctaaaaaacaaacaaacaaaca 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)