Query= MSMg01no151_b16.b1 MSMg01no151_b16.b1 CHROMAT_FILE:
MSMg01no151_b16.b1 PHD_FILE: MSMg01no151_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:50 2005
(378 letters)
>mm_chr2_152603568_152604344
Length = 777
Score = 617 bits (319), Expect = 0.0
Identities = 337/343 (98%), Gaps = 2/343 (0%)
Strand = Plus / Plus
Query: 1 gacagagccagacaatatctcaacctcccaaattgtggacacgcccccccaaacttttgt 60
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 201 gacagagccagacaatatctcaacctcccaaattgtggacac-ccccccaaaacttttgt 259
Query: 61 ggaatattatatagctttaaaaaggggtggtggtggtggtgatggagagatggctcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggaatattatatagctttaaaaaggggtggtggtggtggtgatggagagatggctcagca 319
Query: 121 gttaagagcactgactgcttttccaaaggtcctgagttcaaatcccagcaaccacatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttaagagcactgactgcttttccaaaggtcctgagttcaaatcccagcaaccacatggt 379
Query: 181 ggctcacaaccacccgtaatgagatctgacgcccttttctggagtacttacatataataa 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 ggctcacaaccacccgtaatgagatctgacgcccttttctggagaacttacatataataa 439
Query: 241 ataaatatttcttaaaaaaaaaaaaaaa-gatgagtcgggcactggtggtgcacaccttt 299
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 ataaataaatcttaaaaaaaaaaaaaaaagatgagtcgggcactggtggtgcacaccttt 499
Query: 300 atcccagcacttgggaggcaggggcaggtggatttctgagttc 342
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcccagcacttgggaggcaggggcaggtggatttctgagttc 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space: 283392
Effective search space used: 283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_b16.g1 MSMg01no151_b16.g1 CHROMAT_FILE:
MSMg01no151_b16.g1 PHD_FILE: MSMg01no151_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:50 2005
(638 letters)
>mm_chr2_152730463_152731500
Length = 1038
Score = 955 bits (494), Expect = 0.0
Identities = 523/540 (96%), Gaps = 12/540 (2%)
Strand = Plus / Minus
Query: 1 caaatggctgctgggtggacggggccctgcctgggacaatgaagggtgtctgtgtcaaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 528 caaatggctgctgggtggacggggccctgcctgggacaatgaagggtgtctgtgccaaca 469
Query: 61 gtgaggtaggggctgaggaggctcctccaaggcgtagctcacctgacacctgggccactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtgaggtaggggctgaggaggctcctccaaggcgtagctcacctgacacctgggccactc 409
Query: 121 tggcaatttttcagggctgctgaagcttggggttttgatgaccagtagctgccgcagcct 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 tggcaatttttcagggctgctgaagcttggggctttgatgaccagtagctgccgcagccc 349
Query: 181 ggacaggagcctgcacatctggcagggcatggcccacatcaaggggatgcctgtcctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggacaggagcctgcacatctggcagggcatggcccacatcaaggggatgcctgtcctgct 289
Query: 241 agcaacaggtttaaaagggcgaggatctcccttttaaagggcctgtctgtgaaaggctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agcaacaggtttaaaagggcgaggatctcccttttaaagggcctgtctgtgaaaggctta 229
Query: 301 gctggggcttccccaacccccacctccaacacacacacacacacacacacacacacacac 360
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 228 gctggggcttccccaacccccacctcca------------acacacacacacacacacac 181
Query: 361 acacacacacacacacacacacacacacacactgttgagttcagtgaggtcctagctcat 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 180 acacacacacacacacacacacacacacacactgttgagttcggtgaggtcctagctcat 121
Query: 421 aagcagagagattggcaccaccctccatgagctcctgaagacacccacacccatgcaaag 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aagcagagagataggcaccaccctccatgagctcctgaagacacccacacccatgcaaag 61
Query: 481 tttctttctccacaagaaacgttggggatacaaagaccttgtcacttccagcagggaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tttctttctccacaagaaacgttggggatacaaagaccttgtcacttccagcagggaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
