BAC Information

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BAC

Clone NameMSMg01-151C01
Chromosome2 (Build37)
Map Location 34,443,554 - 34,443,802
singlet/doubletsinglet
Overlap geneMapkap1
Upstream geneLmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, LOC623448
Downstream geneLOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C01.T7 (MSMg01no151_c01.b1)MSMg01-151C01.TJ (MSMg01no151_c01.g1)
ACCAG353378AG353379
length760731
length of high quality
(start - end)
258 (72 - 329)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no151_c01.b1 PHD_FILE: MSMg01no151_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:51 2005CHROMAT_FILE: MSMg01no151_c01.g1 PHD_FILE: MSMg01no151_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGAATCCGCGGAA
TTCATGAATGCATTTAAGGTATTGTTTCTTCTGGGCCTCTGGCTGTTACA
ATCTTTCTGTTCCCAATTTCAATGGTGGTCTCTGAGCCTTTCAGTGAAGG
TGCTATGTATCCTGTTGCAGGGTATTTGATCACACTGTGAACCCCACGGT
TGTGTTAGTTACTGAAAAAACCTGTTTTTAGTTGTGGTGTGGCTCAGCCC
TTAGCTCACACCTTTAATCCCTCTGGTTGGAATACAGATGTGCCCTTAGT
ACACACCTTTAATCGTAAACAATGAATTTAAAGTTACTTGCCAAATGGAA
GCAAGCAGCCATGTTTGTATTGTGATGTCCAACTGAATGACCAAGTGATG
CATCAGAAAAAGATTCCCCCCCCCTATGACATACCCAAATCTCTCCCACA
ATACGCAAGGATCTATTTTCACCATGCCACCTTGACATCCACCGGTTGCC
GAGATAACACCCCATATTCCCGTGTCCACACAATGACCCTCACAAAAACA
CTTACCCCATTACTACTTTGTTGCTCCCCTTCGTTATGAATCCCACCCCG
CGTTCCCTCCGCTCCAATTTGATTCGTTCCTTCCCTTCCCTTTCCCCTTC
TCTGTCCACCCATTCTCGACCCTCACCTCCTTTTCCCCCTATATTTCCAC
CCCCTTTCCCCCCATTTTTTTTCCCTTCTTTTCCCACCCTCCCTTTCCCC
TGCCCCCCTT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGGGCGGCTCTGGGGGAGA
TGTTGGAGAAGATACACAGGTAGACAGATCCTGACATCTGCAGTCATCAG
AATCTTGCCTCAACGAGCCACTGTGTTAGCTCTAGTACACAGGATTCCCC
AGAGGCCACCATCAGTATGTCCTGTTACTATTACTATTAAACTCACTAGA
TTTTTGTTTGTTCCAATCAGGGGGCCAATCACTGAGCTGCATAATTGTCA
ATGCTGAATCAAGTGACCATATAGATCAGATGTGGAGTCACATGTGATGT
ATGCCCCCTTGAATCACTGTAGTGACCTGCCCTCAGCATATGAACTCATG
TTTGTGGGCAAGCCCCCCCAAACTGAGCTATAGCAGTACTACAAACAGTC
CCTCTTGATCATATCTTAAATAATTACATCTTTGTCATGAGTTTATTAAC
AGAATCCACTGTGTTTCATAGTCAGAGATTGGTGGAATACTGGTTTACAT
TTGAGTCTTACACAGCACAGCTCTCTCATCTCGACTTTCTTTTTTTTTTT
TAAAAACTCTTTTTTTTTAAAAGACTTATTTCTTTACTATATGTAACCAC
CCTGTACCTGTCTTCATACCCTCCCCAACAGAGAGTCCGACCCTCCTTAC
CCATGGTTGTGACCCCCCCTGTGGCTGCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c01.g1 MSMg01no151_c01.g1 CHROMAT_FILE:
MSMg01no151_c01.g1 PHD_FILE: MSMg01no151_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:52 2005
         (249 letters)



>mm_chr2_34443354_34444002
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccaagggcggctctgggggagatgttggagaagatacacaggtagacagatcctgaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 tcccaagggcggctctgggggagatgttggagaagatacacaggtagacagatcatgaca 390

                                                                       
Query: 61  tctgcagtcatcagaatcttgcctcaacgagccactgtgttagctctagtacacaggatt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 389 tctgcagtcatcagaatcttgcctcaacgagacactgtgttagctctagtacacaggatt 330

                                                                       
Query: 121 ccccagaggccaccatcagtatgtcctgttactattactattaaactcactagatttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccccagaggccaccatcagtatgtcctgttactattactattaaactcactagatttttg 270

                                                                       
Query: 181 tttgttccaatcagggggccaatcactgagctgcataattgtcaatgctgaatcaagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttgttccaatcagggggccaatcactgagctgcataattgtcaatgctgaatcaagtga 210

                    
Query: 241 ccatataga 249
           |||||||||
Sbjct: 209 ccatataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)