BAC Information

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BAC

Clone NameMSMg01-151E06
Chromosome2 (Build37)
Map Location 108,666,404 - 108,666,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003
Downstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151E06.T7 (MSMg01no151_e06.b1)MSMg01-151E06.TJ (MSMg01no151_e06.g1)
ACCAG353480AG353481
length739733
length of high quality
(start - end)
341 (75 - 415)450 (77 - 526)
definitionCHROMAT_FILE: MSMg01no151_e06.b1 PHD_FILE: MSMg01no151_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:02 2005CHROMAT_FILE: MSMg01no151_e06.g1 PHD_FILE: MSMg01no151_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGAGGATCCGCG
GAATTCAACAGCTTATGCAAATGTAGAAAGATAAACTGTCAATGTCGTGT
ATTTGATCAGTGCAACCTTTAGAAAAGGTAAGCTTGGGCTACCCTTTCCA
TACTGTGATGGACATACGTGGTCACCTAGAAAGGGCAAGGAAAGGCACAG
AAACGTGTGCTGCTTTTGCAGGGTGTATAAAATTGTTGGTTAATATATTT
CTAAGGCTAGAGAATGTGCAACAGGAGTTAAATATAGTTATTGAACATTT
GCCACATTTATGAACTTCAGAAATGTTAAGAGAACATTTTTATTTTTTCC
TTCTCACACGGGAGGCTTTGGAAATGTGTACAATTAGCATGAATTATCAA
CCCCAGTGGGTGGGGACCCCCCCGTGTGCCTCCCACGATTTCTTACGAGT
GTAACTCCTGCAAGCATCAAGCAAACACAGCTCTGGCTGCTTTCCTTTTG
ACAACCAAAGTTTCACTCCAAGCGATGCTGGAGGTCTTAGTCACAGCCGT
TTCAGAATCCGAGTGCTTCATTTCTCACCCAAACCAATCCTCACATTTAC
GTTTGGTGAGCCTGACACTTTCCTGGCTGGTTCCTCCTGCCCCATTCTGA
CCCCCTCCCATTTATCCTCACCCATTCCCCCTACCCCCATCCCATGTTTA
TCCCCTCTTCTCTAGATTTTAACTCTTTCGAATTCCTAN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATTTCTGTTTTACAAATAAT
TTGAGGAACATTAATGCTTTGGTAGAAATCAACAGTGAGATCATCGGGCC
CTGCGTTCTTATAGTTAGAAACATTTCTACTTCTTCAGCCTTGTTGCTTA
AATTGTGATGTTTGACTGAGAAATATCCTTCATAGGCTCATGTATTTGAA
GAGTTGGCCCATGGTTGTTGATACTAGATTTGCTTAAATTGTGATGTTTG
ACTGAGAAATATCCTTCATAGGCTTGTGTATTTGAAGAGTTGGCCCATGG
TTGTTGATACTATCTGTAGAAGTTTTGGAACTTTGAGGAGTGAAGTCTTT
ATGGGGAAAGTACATTACTGCCCCCCGATTTTGACAATTTATAGCCTTGC
CCCATTTTCTGCTCTTCCTCCCCCTCTCTACTCCTTCTACTTTCCCCTCC
TCCTTTCCTCTCCCTCTCCCTCCCACTTACTCTCGTTTTCTCCCGTTCTC
TCTCTCTCTCTCTCTCTCCCTCTCCTCTTTTTCTCTCTCTCTCCCCCCGC
GCGTTGTGCGCTTTTGCCTTCCTTGTTTTTTCCATCTTTCGTTCTCACCT
CATCCCCCCTTTTTTGACCCCATCCTTCTTTTCCCTCAACACCTAACCCT
GTTCATTACCCCTTCATCTCCGATATACAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_e06.b1 MSMg01no151_e06.b1 CHROMAT_FILE:
MSMg01no151_e06.b1 PHD_FILE: MSMg01no151_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:02 2005
         (341 letters)



>mm_chr2_108666204_108666944
          Length = 741

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagataaactgtcaatgtcgtgtatttgatcagtgcaacctttagaaaaggtaagct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaaagataaactgtcaatgtagtgtatttgatcagtgcaacctttagaaaaggtaagct 482

                                                                       
Query: 61  tgggctaccctttccatactgtgatggacatacgtggtcacctagaaagggcaaggaaag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 481 tgggctaccctttccatactgtgatggacataagtggtcacctagaaagggcaaggaaag 422

                                                                       
Query: 121 gcacagaaacgtgtgctgcttttgcagggtgtataaaattgttggttaatatatttctaa 180
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 421 gcacagaaacgtgtgctgcttttgcagcatgtataaaattgttggttaatatatttctaa 362

                                                                       
Query: 181 ggctagagaatgtgcaacaggagttaaatatagttattgaacatttgccacatttatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggctagagaatgtgcaacaggagttaaatatagttattgaacatttgccacatttatgaa 302

                                                                       
Query: 241 cttcagaaatgttaagagaacatttttattttttccttctcacacgggaggctttggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttcagaaatgttaagagaacatttttattttttccttctcacacgggaggctttggaaa 242

                                                    
Query: 301 tgtgtacaattagcatgaattatcaaccccagtgggtgggg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtgtacaattagcatgaattatcaaccccagtgggtgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)