Query= MSMg01no152_b20.b1 MSMg01no152_b20.b1 CHROMAT_FILE:
MSMg01no152_b20.b1 PHD_FILE: MSMg01no152_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
(436 letters)
>mm_chr2_3648443_3649279
Length = 837
Score = 675 bits (349), Expect = 0.0
Identities = 404/435 (92%), Gaps = 23/435 (5%)
Strand = Plus / Minus
Query: 4 ggaattccatcctctcac-ccatgtcttaacttaaagcactggaaagagaaaagaagtga 62
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattccatcctctcacaccgtgtcttaacttaaagcactggaaagagaaaagaagtga 457
Query: 63 ggatagaccccttggctaacgagagctggggtctcactaagatccagatatatgcacccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggatagaccccttggctaacgagagctggggtctcactaagatccagatatatgcacccc 397
Query: 123 agactgcagggcgtctacctgttactaataaggggtatacagtgcagaacctcaggg-ca 181
||||||||||||||||||||||||||||||||||| || |||||||||||| | ||| ||
Sbjct: 396 agactgcagggcgtctacctgttactaataaggggcatgcagtgcagaaccac-gggaca 338
Query: 182 gaccgcagagctctgacaacaggatacgggtgcaccttctgagcacacactactgactcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 gaccgcagagctctgacaacaggatacgggtgcaccttctgagcacacactaccgactcc 278
Query: 242 ccagctgcccttctggattttagtgtgttttaagggttttgtttttgtcttgctttgttt 301
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccagctgcccttctgggttttagtgtgttttaagggttttgtttttgtcttgctttgttt 218
Query: 302 tttaaaaagggacaaggaactctgtggccggacacaccactccacccaaatcatcaagat 361
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 217 tttaaaaag--------------------ggacacaccactccacccaaatcatcaagat 178
Query: 362 agggtgggcggagacggaagactcacttgcagttatcaagcagatggaggaaaaaggaaa 421
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agggtgggtggagacgggagactcacttgcagttatcaagcagatggaggaaaaaggaaa 118
Query: 422 agttcagctagaagc 436
|||||||||||||||
Sbjct: 117 agttcagctagaagc 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_b20.g1 MSMg01no152_b20.g1 CHROMAT_FILE:
MSMg01no152_b20.g1 PHD_FILE: MSMg01no152_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
(541 letters)
>mm_chr2_3537882_3538822
Length = 941
Score = 980 bits (507), Expect = 0.0
Identities = 528/535 (98%)
Strand = Plus / Plus
Query: 1 tagggtgtgcctacttatttatgatgttacagtcggatgatgggcacacagaggccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggtgtgcctacttatttatgatgttacagtcggatgatgggcacacagaggccttcc 260
Query: 61 tactgtaaccatccatcagcaatggttgccggtctttcctctggtttagctctgtgaaag 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tactgtaaccatccatcagcaatggttgccggtcttttctctggtttagctctgtgaaag 320
Query: 121 gatccttcattcactcttgaggaagaacttggccacatgtgtgaataatctgatgaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccttcattcactcttgaggaagaacttggccacatgtgtgaataatctgatgaccat 380
Query: 181 ggaaatgtaacactgcacccctcaattgaaggaagagagaggaatttatagctagttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaatgtaacactgcacccctcaattgaaggaagagagaggaatttatagctagttcct 440
Query: 241 ccaaagtgaagtactcctttgtggaaggagggtgaaggtgcagaagtaccaggaagccaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaagtgaagcactcctttgtggaaggagggtgaaggtgcagaagtaccaggaagccaa 500
Query: 301 aaggatcccttccaggaagctcatgaattttaggaagttcaggaactccatgaaggtaac 360
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aaggatcccttccaggaagctcaggaagtttaggaagttcaggaactccatgaaggtaac 560
Query: 361 aggattcacaagggtatgccctaagtttataaaagtagcacatggtttgaagggatgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggattcacaagggtatgccctaagtttataaaagtagcacatggtttgaagggatgata 620
Query: 421 ctgacctatacttcatcagctcagaatacttccagccaccaagttctaagcacaagtgag 480
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgatctatacttcagcagctcagaatacttccagccaccaagttctaagcacaagtgag 680
Query: 481 attcattaccctggagaggcaagcagggcagttggtacaagtttgggctctgcct 535
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttattaccctggagaggcaagcagggcagttggtacaagtttgggctctgcct 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
