BAC Information

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BAC

Clone NameMSMg01-152K18
Chromosome2 (Build37)
Map Location 148,771,433 - 148,771,743
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744
Downstream geneGm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152K18.T7 (MSMg01no152_k18.b1)MSMg01-152K18.TJ (MSMg01no152_k18.g1)
ACCAG354484AG354485
length710848
length of high quality
(start - end)
305 (68 - 372)---
definitionCHROMAT_FILE: MSMg01no152_k18.b1 PHD_FILE: MSMg01no152_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:50 2005CHROMAT_FILE: MSMg01no152_k18.g1 PHD_FILE: MSMg01no152_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCACC
CATTTCCCCACGCAAAGATAGAAGAGTATTGTCATTGAGCCTATTTAAAA
TTCATGATTGAGTGTTAAGAACACATGTGCAAACTCAGCTTGTGAGGCTG
TTAGCTATTACCTGTCATTTCAAAATGTTCTCATTTTTACCATCTGACTT
TTCTATGGGTTTCAAGTTGTCCCTTATCACATGGATCAGAATAAGAAGTC
TTTAACAAGACTTTGCTATCTTGTGATATGAAAGGGAGTCATCCCTGACC
TTTTCTGAGATGGTTCTTTTTTAAATTTACAGAATAACCCTCTACTATGG
AAAAAAAAGACAAGATGTTCCTGCTTTAGGACTCAAGAGAACTAGTTAAT
CTATTCAGTCAATAAACTAAGCAGAGATCATTCTGGGCCCAATCTCCTGA
GTTGGAAATGGAGGACAAATGAATGGATATTGAGTGCAATTCTTTCCTGC
CATTCATCAGAGAATGAATTTACTTGAAATGGCATTTCTTAAATATTTGT
CAGTACATAATTAACATTCTAACATATACAACCATTCTAATCATATACTT
TTTGCATTGACATCAATAACACACCTTACTAACACTATGCAATGTGAGCA
CTACGACTGCACAACCGCATCTGGGCTATTTTTGAAACACCCCAATTGTT
GCCTTAAGAG
TAACTACAATGAAAGAACAAAACGGGGGGGCGGCCATTGGGACGGGCTAT
TTAGTGCGTGGGGTTGGCGGGCGGCTGGTTTTCCCAATTGCGGTGACGCT
ATAGAAGGTTTCCCGCAATTCTGTTCTCTGCCCTGCCTTCTTTTACATCT
TTCGAAGGACTGGTTTCTCGCTTTTTCTAGGGAGGGGGAACTGAAGATTT
CTCGTAACTGCCCTTTGAAAGTCCGGATCCCTAAAAAAATGTTGTCGGGC
TACGCGGGCCGTTAAGAATGCTTTGCGGTCTTCGGCGAACACGGTCCAAC
AGTATGCTGGGGGGAGAGGGGTGATTTTGGGGCCCCATTCCCACTGTTAC
ACCGTATTTTGTGCCACGCAACCCTCTGACCTTTCATCGGGGATGGGGCT
GAGTGGGGGGATGCCCTATTGTAAAACCGCAGAACCTGGTTCCGGGTCCT
CCCTAACTAACAAGGTCACCCCTCCATGGGGATAATCCGTGGGGGTTACT
CACTTGGGCCCCCGTCCTCCCCACAATAAATTTGCACACACCCACAAGTA
CTTGGGTCCACCCAACCCTTCCCGACTTGTCTCGGGGTTGATTTGGGACA
CACCCCGTGGGGGTTGCGAAACACAGGGGGGGGGTGGACAATGGGAGGCA
TAAAAAAAGGCCGGCCCTGGGCACGCACAAGGGGGCCCCCAATGGGTCAA
CACAGGGCGTCTGCAAAATGTCCTCCTATGCCCCTGCAATGATAGTATCT
GGTGGTACAAACCCCCCTTTGTTTCCGGCCTCTGCTGCTATTTGTACCTG
GTCTTACACACATTTCTCTCTAATCAACCGCGTTCCTAACGTGCGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_k18.b1 MSMg01no152_k18.b1 CHROMAT_FILE:
MSMg01no152_k18.b1 PHD_FILE: MSMg01no152_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:50 2005
         (305 letters)



>mm_chr2_148771233_148771943
          Length = 711

 Score =  420 bits (217), Expect = e-122
 Identities = 289/315 (91%), Gaps = 14/315 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaagagtattgtcattgagcctat-t-taaaattcatgattgagtgttaagaacac- 57
           ||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||| 
Sbjct: 201 atagaagagtattgtcattgagcctatctgtaa--ttcatgattgagtgttaagaacact 258

                                                                       
Query: 58  -atgtgcaaa-ctcagcttgtgaggctgt--tagctattacctgtcatttcaaaatgttc 113
            |||| | || ||||| ||||||||||||  |||||||| ||||||||||||||||||||
Sbjct: 259 tatgt-ctaatctcagattgtgaggctgtgttagctattgcctgtcatttcaaaatgttc 317

                                                                       
Query: 114 tcatttttaccatctgacttttct-atgggtttcaagttgtcccttatcacatggatcag 172
             |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 318 aaatttttaccatctgacttttctcatgggtttcaagttgtcccttatcacatgcatcag 377

                                                                       
Query: 173 aataagaagtctttaacaagactttgctatcttgtgatatgaaaggg-agtcatccctga 231
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 378 aataagaagtctttaacaagactttgctatcttgtgatat-aaaggggagtcacccctga 436

                                                                       
Query: 232 cctttt-ctgagatggttcttttttaaatttacagaataaccctctactatggaaaaaaa 290
           |||||| ||||||||||||||| | ||||||||||||| || |||||||||||||||| |
Sbjct: 437 cctttttctgagatggttctttgtcaaatttacagaatgactctctactatggaaaaaga 496

                          
Query: 291 agacaagatgttcct 305
           |||||||||||||||
Sbjct: 497 agacaagatgttcct 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 711
Length adjustment: 9
Effective length of query: 296
Effective length of database: 702
Effective search space:   207792
Effective search space used:   207792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)