BAC Information

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BAC

Clone NameMSMg01-152K24
Chromosome2 (Build37)
Map Location 122,127,259 - 122,127,549
singlet/doubletsinglet
Overlap geneDuoxa2
Upstream geneMtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2
Downstream geneDuoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152K24.T7 (MSMg01no152_k24.b1)MSMg01-152K24.TJ (MSMg01no152_k24.g1)
ACCAG354496AG354497
length722794
length of high quality
(start - end)
291 (63 - 353)---
definitionCHROMAT_FILE: MSMg01no152_k24.b1 PHD_FILE: MSMg01no152_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:51 2005CHROMAT_FILE: MSMg01no152_k24.g1 PHD_FILE: MSMg01no152_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCCTATATCGAGAGCATCCGCGGAATTCACGTCC
CATCTATACGAGGGGGGAGGCCGAGGGGCTGGGAGGGGAGGCTCAGGACC
CAGCTCTCCCGGGGTGGGGGTTGGGGACGGTTCCTCTACACCGCCAGCAG
TCCTGGTCAGGGAACTCCCGCTCATGGAGCGCTGCCTTGGTCCCTCGCAG
GGTGGCATTCTGCTTCTGGATCATCGCCAATGCGCTGCTCTCCATGCCCG
CCCCACTCTACGGAGGCCTGGCTTTGCTCACCACCGGCGCCTTCACGCTC
TTCGGTGTCTTCTTCTTCGCCTCGATTTCCAGCGTGCCGCTCTGCCACTT
CCGCCTGGGCTCCGCCGTCCTCACGCCTTACTACGGCGCCTCCTTTTGGA
TCACGCTGGTCATCGGTGAGTATCGACTGATGCTTACCTGCTGCTGACCC
GCGTGTGTATGGGACGGACGCTCTCCGGCCTACACAATGGCCTCTCCCAC
CTACTATGCTCGTCCCCGTAACTAGCCTAACGTGGTCCGACACTGCTAAT
TTCCCGCTGACACGAGCCAGCCCACACGCCCCCCCTATTTTGCCCCCCCC
TCTCTGCATCAACTGTCCATTCCTATCTCGCATTTTGCGCCCTCATCCAA
AATTCCCCCCCCTCCCCCCTATTTCCTCTCCCTATGCCCCCCCCCGCCTC
TTCTGAACATCCCCCTTGCCCT
TTTCCTCCTCCCGCCCCCTCCCACCACCCCCCCCCCCCCTCCCCCCCCCC
TCTTTCTCGCATCAAGCGGGTACGACTGGAGGCCGCCCGGTCTCCACAAT
TTAGGCGACACTACACAAGGTTTCGCGCCAATCACGCCCTTGAGAATCAT
CAGTCCTGCTGCGCGATGGTGCAGGTCTCAGATCACCACACTACTGTGCC
AAGTGGCAATCATCCTTGGCAGCTAACCAAACAATATCAATAACATTCAT
GTCTAACTCGCGCTTAAAGACGAAAAACACACTTTGATGGGGCCAGGCGC
GAAAGAGACATCTTACTATACTTCCCAGGATATTCTTACACTCCTTAAGA
CCAGAACTCATCTTCCTGCATCACCCTTCAAGGTACTGAGCTGACACGTG
TGCAACACTACACCAGGATGACATTCTATTCACGTACTTAACAGCCCGAA
TTTAATCCCCCGCCCCTCAGGAGTTTGACCTACCAGTATATTACACAATC
CCATGGGGCACCCTAGTTTATCAATGAGTACCCAGCCCGCTATCACTAAC
TAGCAACATTGTATCCCAAATCCCCGAGAAGACCAAATTCCGCTGACCAA
CAGCCGACCCAAAATACCCCCACCGAACCGTCAAACGTCGCCACAATGTA
TTTCCCCATCCCCCCCGCAATTTACCCCTACCCATGCCCTCTTAATCACG
CCTGAACAACCACCCCTTTATCCTCCATTGACTTGCTTAACACTGCCTAA
ACTAACAACGATTCAACTTTATAGCCGCCTCCAAAAGTCTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_k24.b1 MSMg01no152_k24.b1 CHROMAT_FILE:
MSMg01no152_k24.b1 PHD_FILE: MSMg01no152_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:51 2005
         (291 letters)



>mm_chr2_122127059_122127749
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggggaggccgaggggctgggaggggaggctcaggacccagctctcccggggtgggggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggggaggccgaggggctgggaggggaggctcaggacccagctctcccggggtgggggtt 260

                                                                       
Query: 61  ggggacggttcctctacaccgccagcagtcctggtcagggaactcccgctcatggagcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggacggttcctctacaccgccagcagtcctggtcagggaactcccgctcatggagcgc 320

                                                                       
Query: 121 tgccttggtccctcgcagggtggcattctgcttctggatcatcgccaatgcgctgctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccttggtccctcgcagggtggcattctgcttctggatcatcgccaatgcgctgctctc 380

                                                                       
Query: 181 catgcccgccccactctacggaggcctggctttgctcaccaccggcgccttcacgctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 catgcccgccccactctacggaggcctggctttgctcaccaccggtgccttcacgctctt 440

                                                              
Query: 241 cggtgtcttcttcttcgcctcgatttccagcgtgccgctctgccacttccg 291
           ||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggtgtcttcgccttcgcctcgatttccagcgtgccgctctgccacttccg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)