BAC Information

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BAC

Clone NameMSMg01-152M20
Chromosome2 (Build37)
Map Location 17,484,581 - 17,484,940
singlet/doubletsinglet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M20.T7 (MSMg01no152_m20.b1)MSMg01-152M20.TJ (MSMg01no152_m20.g1)
ACCAG354577AG354578
length720885
length of high quality
(start - end)
360 (71 - 430)---
definitionCHROMAT_FILE: MSMg01no152_m20.b1 PHD_FILE: MSMg01no152_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:00 2005CHROMAT_FILE: MSMg01no152_m20.g1 PHD_FILE: MSMg01no152_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGTTCCTCCAGCATCATGTCTGCCTTCCTGCCAGAGGACTAAAC
CTCTGAAACTGTAAGATAGTCCCACTTAAATGTTTGCCTTTATAAGAGTT
GCCTTGGTCATAGTGTCTTCATAGCAATAAAAATCTAGCTAAGATGGTAA
GTATTGGTTTCTAATTTTGCTAGTACCAATGTTGTCTAGTGAAGTTGCCT
AGGAGGAAAGCTAATGTAACTACTTACCCAGTGAGTGTGGTCAGTAAGAC
TCACTAGCACTAGAGGTGTAGTTGTAAGGTGGGCAGGGCTCATTGGGGCA
GGGCTCACTGGGGCCTTCCCTCTGTGTGTGCACTTGCATTCTGAACGATG
CTGGTACAAATAGTATTGAAGATAGCTCCAAATTAGAAGAAAACCTTGAG
CATTGACAAGTTTAAATAGAAAACAAGACTCTTTGGGGGAAGGCAGGGCC
TTAGCGGAGCAATGGAGCATTGAAGGTGTCAGGAAAATGGATGGACCCAG
AAAACTATGGCAGGAACTGGGATGTGGTAGATAATGTTGTTTGGCCATCC
ATGGGGTAGTGACTATACAGAAAATCTAGAGGGCCTAAGAAATTCTTGTA
AAGATGCTGACAGCACCCCAACGACGATGACTTCCCCCACTTCCTGCAAG
TCCTAGTATTCCCACTCCTC
GGGGGACTGCGGGCGGAAAAAACCGGACACGGCTTAATAACACACCGAAT
ATATTGCTCGGCCTGGCGGACGGCTGGCTCTCCCCACTTGGGTGATCCTG
TGGAAACTTCCCCCCACTTCATTCTTCCACACATGCACGGTGTATTTACT
TCTTTACTGCCTTATGTATCTACCCATAACTAGGGTATGGGCATATGTAC
ATGTATGGGCACACACATGTATGAATGTCGTGCAAGCATAATATATGTGG
ATTACACAAACACCGGGGGTATACATACACAGGCGTGGTGTGTATGGGTG
AATGAGGAATAACGAGGTGTTGTGGGGTAGGGGGGAAAAAGTTTGCACTC
AATCGGACAGTAACACACCAAGGTGCGGGGAAGGTTCTAACACAGTTATA
TCCACTCCCGGCGTGCTAAACATTGTTAGACTGGAAACCTTAAGAACAAC
GGGGGAAGGTGTGGGAGGGAAAGAAAATTTAACCGTGGGATGACAATGGT
GGGGCGTCGGGGGGGGAAACCAAACGGGGGATAAAAAACAAAAATAGGGG
GGGTAAACCATAGTGGTGAGGGGACCGCGAATAAAACACCACGATAGGGG
CCACAGCGGTCAAACGCCTTAGGGAAAGGCAAACCGGGGGGATGGACCAA
AGGGAGGGGGGCAACAAATGGGGCAAACCAAGGGAGAACCAGCGTGGAAC
ACAGGTGGGCACCACACCGGGGGGGCCACAATGTGACGCACTTTACGCAT
ACCCTTGGATACCTATGGGTTTAACATACACACAATGTGTTATTCGGGTG
AATGGNGCGCTTGTGTGGACAGGGGTGGTTCCAAAAAACTCGTTCTCTCC
TACAAATTCGGGGATACCGCCTACGCTGGGCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m20.b1 MSMg01no152_m20.b1 CHROMAT_FILE:
MSMg01no152_m20.b1 PHD_FILE: MSMg01no152_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:00 2005
         (360 letters)



>mm_chr2_17484257_17485016
          Length = 760

 Score =  650 bits (336), Expect = 0.0
 Identities = 354/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtctgccttcctgccagaggactaaacctctgaaactgtaagatagtcccacttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catgtctgccttcctgccagaggactaaacctctgaaactgtaagatagtcccacttaaa 625

                                                                       
Query: 61  tgtttgcctttataagagttgccttggtcatagtgtcttcatagcaataaaaatctagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtttgcctttataagagttgccttggtcatagtgtcttcatagcaataaaaatctagct 565

                                                                       
Query: 121 aagatggtaagtattggtttctaattttgctagtaccaatgttgtctagtgaagttgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagatggtaagtattggtttctaattttgctagtaccaatgttgtctagtgaagttgcct 505

                                                                       
Query: 181 aggaggaaagctaatgtaactacttacccagtgagtgtggtcagtaagactcactagcac 240
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 504 aggaggaaagctaatgtaactacttacccagtgagtgaggtcagtaagacccactagcac 445

                                                                       
Query: 241 tagaggtgtagttgtaaggtgggcagggctcattggggcagggctcactggggccttccc 300
           || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaaggtgcagctgtaaggtgggcagggctcattggggcagggctcactggggccttccc 385

                                                                       
Query: 301 tctgtgtgtgcacttgcattctgaacgatgctggtacaaatagtattgaagatagctcca 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgtgtgtgcacttgcattctgaatgatgctggtacaaatagtattgaagatagctcca 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)