BAC Information

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BAC

Clone NameMSMg01-153C22
Chromosome2 (Build37)
Map Location 139,874,426 - 139,874,842
singlet/doubletsinglet
Overlap geneTasp1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneLOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153C22.T7 (MSMg01no153_c22.b1)MSMg01-153C22.TJ (MSMg01no153_c22.g1)
ACCAG354853AG354854
length728730
length of high quality
(start - end)
417 (144 - 560)523 (66 - 588)
definitionCHROMAT_FILE: MSMg01no153_c22.b1 PHD_FILE: MSMg01no153_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:30 2005CHROMAT_FILE: MSMg01no153_c22.g1 PHD_FILE: MSMg01no153_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGGAATTCTAGCT
CCCGGGACCGGAATACTTTCTTCTGTTTTTCCTGGCACCTGCATGAATGC
ACACATGGACATACACACAGACACGATATCAAAAGTAATAAAAATAATTG
TTTACAATTTATTTATTAACTCACCTGATGTGGGTCCCAGAAACTGAACT
GGGTATCCCTGGAAGAGCAGCAGGTGCTCTTAACCACTGAGCCATTTCTA
GTTCTAATAATAATTTTCTTAAGGAAACTAGTTTATTTGGAGCCAAACTG
TTAAGTAACTTTCTCGGTATTTGTTTAAAAGACAACATCAGGATTTTTAG
AGTCATGAATTCCTGAGAACTTTACATTCAGTAATTTCCTGAATGGTGGC
GCTTTTAAAAGATGAGTAGTGAGGGTATGTAAGGTTCTTTGTTCCTGGTC
TCACCTGCATTATCAACTCCATACCAGAGGAGCTCCTGAACCTACTGGTT
GTTTTTTGCTTTTATTTGAAAAGGTACATTTATTTATTTATTTGGTTATA
TATTTCATTTGCGTGTAGAGATGGTGGAGGGGCTGTGCTCCAGGACATTT
ATGACGATGAGTACACAGTTCTCTCTTATCACATATGTCTCTGATTTAGA
ATTTATGCTAAGTTCTCTGGGTTGCTGCATGCCTCTCTCCGGAACCGTTA
CAGGTTTTGATCGTTAATGAGCAGTGAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCCAACTTCTGTCTCTGATTTCTTTTTCCTGC
CTTACTGTATTGATCGGGATTTCAGGAAAATACTTCACATAAGAAAAGAA
AATCAAGAAAGCAGATCTCTCTTTTGTGCGTTCACAGGATTAAAAAGTCT
TCCTGATTTTTAGCTATAGGGGTGTTGTTGCTGTTTTTTTTCCCTAAATC
TAAGGAAGTTCTTCCATTATCTGGTATTTTGATGGGGTTTATAATAAGTG
GAAAATGAATGGATTGTGTGGTATCAGGATGAACATATATTTCTTCTCCT
TTATTTTGATAATGCTATAATTACACTGGTTGATATTTTTATAGCTTTAT
GGAAAAACACATATACCATAAAATCCACCATTTTAAATAAATGTTCAATC
CAGTGGTTTGCAGTGTGTTTGTAAAGCTGGACAACTTTATAATTCCAGAA
CATTTTCATGTCCTTAAAAACAAACTCCATATCCACATTCCCTCTCCTCA
GCCCGCACAACCACTAATGTCTTACATTTGTTTCTATGGGTTTTCCAATT
CCAGACATTTATTGCAAATGGAAACATGCTACGTCTGGTCTTTTTCACCT
GGCTTCTTGAACTTAGAGTCTTTGGTGCTATATTCCTGCAGAACTTCATT
CTTCTTGTTGTTACAAAAACATTCCTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_c22.b1 MSMg01no153_c22.b1 CHROMAT_FILE:
MSMg01no153_c22.b1 PHD_FILE: MSMg01no153_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:30 2005
         (417 letters)



>mm_chr2_139874120_139874936
          Length = 817

 Score =  737 bits (381), Expect = 0.0
 Identities = 408/417 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataattgtttacaatttatttattaactcacctgatgtgggtcccagaaactgaactggg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ataattgtttaaaatttatttattaactcacctgatgtgggtcccagaaactgaactggg 664

                                                                       
Query: 61  tatccctggaagagcagcaggtgctcttaaccactgagccatttctagttctaataataa 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 663 tatccctggaagagcagcaggtgctcttaaccactgagccatctctagttctaagaataa 604

                                                                       
Query: 121 ttttcttaaggaaactagtttatttggagccaaactgttaagtaactttctcggtatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 603 ttttcttaaggaaactagtttatttggagccaaactgttaagtaactttctgggtatttg 544

                                                                       
Query: 181 tttaaaagacaacatcaggatttttagagtcatgaattcctgagaactttacattcagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 543 tttaaaagacaacatcaggatttttagagtcatgaattcctgagaactttagattcagta 484

                                                                       
Query: 241 atttcctgaatggtggcgcttttaaaagatgagtagtgagggtatgtaaggttctttgtt 300
           |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 483 atttcctgaatggtggggcttttaaaagatgagtagcgagggtctgtaaggttctttgtt 424

                                                                       
Query: 301 cctggtctcacctgcattatcaactccataccagaggagctcctgaacctactggttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctggtctcacctgcattatcaactccataccagaggagctcctgaacctactggttgtt 364

                                                                    
Query: 361 ttttgcttttatttgaaaaggtacatttatttatttatttggttatatatttcattt 417
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttttgcttttatttaaaaaggtacatttatttatttatttggttatatatttcattt 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)