Query= MSMg01no153_j03.b1 MSMg01no153_j03.b1 CHROMAT_FILE:
MSMg01no153_j03.b1 PHD_FILE: MSMg01no153_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:58 2005
(603 letters)
>mm_chr2_168716998_168718000
Length = 1003
Score = 1075 bits (556), Expect = 0.0
Identities = 588/602 (97%), Gaps = 6/602 (0%)
Strand = Plus / Minus
Query: 1 ggacatggctcagtagcagaggccctgtctagaatcccccagtgactcagtggtggagcc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggacatggctcagtagtagaggccctgtctagaatcccccagtgactcagtggtggagcc 680
Query: 61 cctgcatagtttgttctaggatggtggcactgtaattggatgctttctgcagcagcaggc 120
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 cctgcataatttgttctaggatggtggcactgtaattggatgcgttctgcagcagcaggc 620
Query: 121 aacagcacacagcttctgtggaacaagacagcaagatcaaaaggcggagactccatcaag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 aacagcacacagcttctgtggaacaagacagcaagatcaaaaggcgcagactccatcaag 560
Query: 181 taattcctcagcgctgtctggcgtgttgtgattgtctcacagggttgctgtagtgtgagc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taattcctcagcgctgtctcgcgtgttgtgattgtctcacagggttgctgtagtgtgagc 500
Query: 241 atccaggccactgtgtggattctgtttctctcaccctttgtcatgaatctcatctacgtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 499 atccaggccactgtgtggattctgtttctctcaccctttgtcatgaatctcatctatgtt 440
Query: 301 tctagaagcagaaggttgtggacttttcaagtagcaaaccatagaaggaaacttatacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctagaagcagaaggttgtggacttttcaagtagcaaaccatagaaggaaacttatacag 380
Query: 361 tcaccttccaccaaatgggaaagaagtcagactttccaaagcatttgggctgatggcttt 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 379 tcaccttccaccaaatgggaaagaagtcagagtttccaaagcatttgggctgatgtcttt 320
Query: 421 gtggattgccagggccttagacccaacctgagatcactcagcaagcttggttttgctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtggattgccagggccttagacccaacctgagatcactcagcaagcttggttttgctttt 260
Query: 481 gtctttgagacaggatctcaaagaatagccctcactataaagaccaggctagccttgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtctttgagacaggatctcaaagaatagccctcactataaagaccaggctagccttgaac 200
Query: 541 tcagatatacctgcctctgcctctgcctctgccccagcccctcccccattgtcaccccca 600
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 tcagatatacctgcctctgcctctgcc------ccagcccctcccccattgtcaccccca 146
Query: 601 cc 602
||
Sbjct: 145 cc 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_j03.g1 MSMg01no153_j03.g1 CHROMAT_FILE:
MSMg01no153_j03.g1 PHD_FILE: MSMg01no153_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:58 2005
(561 letters)
>mm_chr2_168571084_168572044
Length = 961
Score = 963 bits (498), Expect = 0.0
Identities = 539/554 (97%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 11 aattcacagagatctgccaagtgctaggattagaggtgttcaaccctcactgggcctccc 70
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 208 aattcacagagatctgccaagtgctaggattaaaggtgttcaaccctcactgggcctccc 267
Query: 71 caatgctaggatcagaagtttgggacacatgtttaccttttaataacccaatacatctct 130
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 268 caatgctaggatcagaagtttgggacacatgtttaccttttaataacccaatcccgctct 327
Query: 131 tttgtttttggaaagcagtgtttatagggccaggccggatagctacagaatctacattct 190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttgtctttggaaagcagtgtttatagggccaggccggatagctacagaatctacattct 387
Query: 191 tacactcagtatcatacagcc---cagactagccttgaatttacctttttcctcaattcc 247
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacactcagtatcatacagccagccagactagccttgaatttacctttttcctcaattcc 447
Query: 248 tagagtggggattatgggtgtggacccacacctggctttaatctacaatactgttgtttc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tagagtggggattatgggtgtggacccacacctggctttaatctacaatactgttgtttc 507
Query: 308 cagaaagtgttccaggaagtgtaggggaatccaaggtaggattccatctcactgctctca 367
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 508 cagaaagtgttccaggaagtgcaggggaatccaaggtaggattccatctcactgttctca 567
Query: 368 ctaagggactgcttggaacagtccaggcactaagatgctagactcaacaggaaagagaaa 427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctaagggcctgcttggaacagtccaggcactaagatgctagactcaacaggaaagagaaa 627
Query: 428 ctgtccttggaagggtcttttgaaagcacgcaggagaccccgagagaatggatatcctac 487
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 628 ctgtccttggaagggtcttttggaagctcgcaggagaccccgagagaatggatatcctac 687
Query: 488 cttgtccaccagctgggataacctagacctgagttagctttggcctattttgttataaat 547
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 688 cttgtccatcagctgggataacctagacctgagttagctttgggctattttgttataaat 747
Query: 548 ggctgccatggaaa 561
||||||||||||||
Sbjct: 748 ggctgccatggaaa 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
