ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATGTTACAAAGTAGAGAAGATAAATTGCCCATTGACCCATTAAAA
TGACACAGAGCCGAGTTATTACCAAAATCCACCCTCAGCTTACATTGCTT
TTCTAACTCTGCTTTATGAAGAAGTCTGTTCCAAAGACAGCACAGAAACA
GCTAGAGTGTTTGGGGTTTGATCCTTATATGAATTTGTATGCCTTCTCTT
TATTCTTCTCTCGCTGTGAAAACTACTTTGGCCAAAATGGACTAAGAAAC
ACACTTGACAAAGGAAATCCTCTCTCGGTGGAGGATATGAAAATGGATCT
CATGGAGCCACTAAGAAATAGAAATATCAAGGTTGGAACCTCCAGTCAGT
GTACCACTCTGTCATGTGACTGATCCTGCCTGGCCCTGGGATAACCTTGA
AAGATCATAAGTATCGCCTGAGAGGAATAGGAAAGGGAGGTGAGAGTGAT
CAGACAAAGTCACTGAAAGATGTGGCTTCAGCTGTGTACTGATCTAATGT
TAACCACCCACTAGGATCAAAGAAGAACATTCTATATGTAAGGTATGCTT
AGCATCAAGCAAGGCCAAGGCAACAACTTCCATCCTTATTGGAGATCTCC
ATGCAATGTGAGATAGAGCATGCTCAACAAGGATGTTAGAAGAACTTTAG
CTGTCATGATATGAAGGAAAAGCTTGATCAAGGCCA

TTTTTTCCTTTTTTTTCTCCATCTCTCTCTCCTTTCTTTTTTTTTCTCCC
CCNNNTCCATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTGTTTAGGATGACTGG
GGCATATGCGATTCTGGAACCTGCCAAATACAACCTCATTTTTTACTGTA
TTCAAGATTGGGTCTTGGCATGACCTGTGTCGAGTTATAAATCGGCTCGC
AATGGTATTACTTAATATACAATTTCGGCTCCACTCTTTACCATGCATGC
ATGAAAAGATAAAGTCCAAGCTACAACACTTTACACCCCACAGTGCTGGC
CCATAAAATTCCTCTGATCGCTATTGCTCCACCCTTAATCGACGCCTGCG
TACCCGCCTTGTGTATCTCCCACAAAACGTATCTATTGCCCTACCATATC
GCCGTGTACCCTTCCATACGCCCAGGACACCTGATGCCCTATCAACCTGC
CCGCCGTGTTAAACTCATCCCCTATGTTGTCCGCCCATTCATGACGGTTA
GATGCCCCTCCCTGAGCCCTCTATTTCAATCCCTTGATTCCTATAGTCCA
CCACCAGTTGTTTGTTTACCCCCCCTCTCACCCTGTCTTATTACTCCCCC
TCCCCCCGTTTCTCATATTCATACTCTTTCTCCACTTCCTTGTCCTCTTA
TTTGCAATTTTTCCAATTATGACCGTCCCCCCTCCTGGTCCCACCCCTTT
CCTCATCTGATTAATACCCCCCCCTATCCTCTTACTTTTCTGTTATTCCC
CTATCTTGCACTTTCTTCGCCATCTTTCCCTATTCCTCTTTCCGCCTTTT
TATTTCATTTTTTTCTATCCCGTCCGTACCATCATCGCCCTCCGCCTCTA
CCTATCCTATTATATGTATTTCCGCCCA

Query= MSMg01no153_j06.b1 MSMg01no153_j06.b1 CHROMAT_FILE:
MSMg01no153_j06.b1 PHD_FILE: MSMg01no153_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:59 2005
         (666 letters)



>mm_chr2_20195524_20196589
          Length = 1066

 Score = 1280 bits (662), Expect = 0.0
 Identities = 665/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagagaagataaattgcccattgacccattaaaatgacacagagccgagttattaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagagaagataaattgcccattgacccattaaaatgacacagagccgagttattaccaa 260

                                                                       
Query: 61  aatccaccctcagcttacattgcttttctaactctgctttatgaagaagtctgttccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccaccctcagcttacattgcttttctaactctgctttatgaagaagtctgttccaaa 320

                                                                       
Query: 121 gacagcacagaaacagctagagtgtttggggtttgatccttatatgaatttgtatgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagcacagaaacagctagagtgtttggggtttgatccttatatgaatttgtatgcctt 380

                                                                       
Query: 181 ctctttattcttctctcgctgtgaaaactactttggccaaaatggactaagaaacacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctttattcttctctcgctgtgaaaactactttggccaaaatggactaagaaacacact 440

                                                                       
Query: 241 tgacaaaggaaatcctctctcggtggaggatatgaaaatggatctcatggagccactaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaaaggaaatcctctctcggtggaggatatgaaaatggatctcatggagccactaag 500

                                                                       
Query: 301 aaatagaaatatcaaggttggaacctccagtcagtgtaccactctgtcatgtgactgatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatagaaatatcaaggttggaacctccagtcagtgtaccactctgtcatgtgactgatc 560

                                                                       
Query: 361 ctgcctggccctgggataaccttgaaagatcataagtatcgcctgagaggaataggaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcctggccctgggataaccttgaaagatcataagtatcgcctgagaggaataggaaag 620

                                                                       
Query: 421 ggaggtgagagtgatcagacaaagtcactgaaagatgtggcttcagctgtgtactgatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggtgagagtgatcagacaaagtcactgaaagatgtggcttcagctgtgtactgatct 680

                                                                       
Query: 481 aatgttaaccacccactaggatcaaagaagaacattctatatgtaaggtatgcttagcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgttaaccacccactaggatcaaagaagaacattctatatgtaaggtatgcttagcat 740

                                                                       
Query: 541 caagcaaggccaaggcaacaacttccatccttattggagatctccatgcaatgtgagata 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 caagcaaggccaaggcaacaacttccatccttattggagatctccatgcaatgtgagaaa 800

                                                                       
Query: 601 gagcatgctcaacaaggatgttagaagaactttagctgtcatgatatgaaggaaaagctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagcatgctcaacaaggatgttagaagaactttagctgtcatgatatgaaggaaaagctt 860

                 
Query: 661 gatcaa 666
           ||||||
Sbjct: 861 gatcaa 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)