Query= MSMg01no153_k01.b1 MSMg01no153_k01.b1 CHROMAT_FILE:
MSMg01no153_k01.b1 PHD_FILE: MSMg01no153_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:02 2005
(662 letters)
>mm_chr2_59417858_59418919
Length = 1062
Score = 874 bits (452), Expect = 0.0
Identities = 494/512 (96%), Gaps = 9/512 (1%)
Strand = Plus / Minus
Query: 5 aattcttctccactgtcgcgtgccagtcactttctctt-accagcgagacacaagggatg 63
|||||||||||||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct: 504 aattcttctccactgtagcgtgccagtcactttctcttaaccagcgagaca------at- 452
Query: 64 gtgctatcttcaagtttgagtgggtaagggaaaatttggaaaaaccaggaagtaattgtc 123
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 -tgctattttcaagtttgtgtgggtaagggaaaatttggaaaaaccaggaagtaattgtc 393
Query: 124 ttgtagaagtaaggagagtttcaagacagaggtaccaaatccacaattgtatgtttatat 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 392 ttgtagaagtaaggagagtttcaagacagaggtaccaaatccaaaattgtatgtttatat 333
Query: 184 gtaggaatatgcatatacattcatatataatgacgtaaaaatatgcctaagcaaaaagga 243
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 gtaggaatatgcatatagattcatatataatgacataaaaatatgcctaagcaaaaagga 273
Query: 244 tagtagaagggtctgaagaatgctcagtctacaaagcgcttgctgcacagacatgagaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagtagaagggtctgaagaatgctcagtctacaaagcgcttgctgcacagacatgagaac 213
Query: 304 ctgagcccagaagctacataaaaaagctgggcacaggcagtcactgcaatcgtagtgctg 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 212 ctgagcccagaagctacataaaaaagctgggcacaggtagtcactgcaatcgtagtgctg 153
Query: 364 tggaggcagaaacagaggatccctagggcttgctggcccgactgtccagcttaactgatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tggaggcagaaacagaggatccctagggcttgctggcccgactgtccagcttaactgatg 93
Query: 424 agcttatgattcaagaagagaccctgcctcaaaaactaagttggagaacaactgaacaag 483
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 92 agcttatgattcaagaagagactctgcctcaaaaactaagatggagaacaactgaacaag 33
Query: 484 agagctgatgttgacctctggcctcacagttc 515
||||||||||||||||||||||||||||||||
Sbjct: 32 agagctgatgttgacctctggcctcacagttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_k01.g1 MSMg01no153_k01.g1 CHROMAT_FILE:
MSMg01no153_k01.g1 PHD_FILE: MSMg01no153_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:02 2005
(631 letters)
>mm_chr2_59312885_59313915
Length = 1031
Score = 986 bits (510), Expect = 0.0
Identities = 605/644 (93%), Gaps = 21/644 (3%)
Strand = Plus / Plus
Query: 1 tgggatggacagccagggccacacaaagaaaccctgtctggaaaaacaaagcaaaacaa- 59
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 196 tgggatggacagccagggccacacagagaaaccctgtctggaaaaacaaagcaaaacaaa 255
Query: 60 ------caacaacaacaacaaaccaaatcaactcataaaaaa-caatgcattgcatacat 112
|||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||
Sbjct: 256 acaaaacaacaacaacaacaaaccaaataaactcataaaaaaacaacgcattgtatacat 315
Query: 113 ctctttgtgag-caagccatctataaacagttatgaagcaatcaaacaaactcaaatact 171
|||||||| || |||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 316 ctctttgt-aggcaagccatctataaccagttatgaa--a--caaacaaactcaaatact 370
Query: 172 gactagtactcagtgacattaaataaagacttctaggggctagagcgatgatggttcagt 231
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 371 gactaatactcagtgacattaaataaagactttt-ggggctagagcgatgatggttcagt 429
Query: 232 ggttaagaacaagtttgtttcccagcacccagatcaggcatcttacaaccacctgtaact 291
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agttaagaacaagtttggttcccagcacccagatcaggcatcttacaaccacctgtaact 489
Query: 292 ctggctttctgggcatgtgatacctctggccttcacagacacctgcactcacatgacata 351
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 490 ctggctttctggggatgtgacacctctggccttcacagacacctgcactcacatgatgta 549
Query: 352 gccatatacagaagacaca--cacatgcacac--gtagatatgcacgtccttataagtaa 407
|||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct: 550 gccacatacagaagacacaggcac--gcacacacgtagatatgcacgtccttataagtaa 607
Query: 408 attttaaaaatattttaaaaggatggttcattttgtataaagacatcataattcttttaa 467
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 608 atttcaaaaatattttaaaaggatggttcattttgtataaagacatcataattctttaaa 667
Query: 468 aatgatggcaataatcattactggaatatatacaaaggacatagatccttgcaaccaagg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aatgatggcaataatcattactggaatatatacaaaggacatagatccttgcaaccaagg 727
Query: 528 acagaggaaaaatttgagaggagtttgtgagccccgtaggaagagagttgcatgtattaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acagaggaaaaatttgagaggagtttgtgagccccgtaggaagagagttgcatgtattaa 787
Query: 588 gacggcattttcctgtgtttacaaaaggggatgggctcaaaaca 631
|| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 788 gatggcattttcctgtgtttgcaaaaggggatgggctcaaaaca 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
