Query= MSMg01no155_b18.b1 MSMg01no155_b18.b1 CHROMAT_FILE:
MSMg01no155_b18.b1 PHD_FILE: MSMg01no155_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:57 2005
(491 letters)
>mm_chr2_68766621_68767513
Length = 893
Score = 919 bits (475), Expect = 0.0
Identities = 488/493 (98%), Gaps = 2/493 (0%)
Strand = Plus / Minus
Query: 1 tttatctgattaagatctatgcccccacatttcacacactcaaaacatgaaaggtcttgt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tttatctgaataagatctatgcccccacatttcacacactcaaaacatgaaaggtcttgt 634
Query: 61 gctgtttatagcagatacgcaagtcctgcgctgggtatggggctcatacaaagtcagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gctgtttatagcagatacgcaagtcctgcgctgggtatggggctcatacaaagtcagatc 574
Query: 121 tgaactgtgcaggtcaacaagtcaaagcaaaggtgacttgcctgcattgagtgatggatg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttaactgtgcaggtcaacaagtcaaagcaaaggtgacttgcctgcattgagtgatggatg 514
Query: 181 ctcatctgtgtccctgtagacacctttcagctctctctatggaccccataccaacacgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcatctgtgtccctgtagacacctttcagctctctctatggaccccataccaacacgtt 454
Query: 241 gtatacattaaatacacatgattaaaatgtctcaagaat--aaaaaaaaaacatgtggta 298
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 453 gtatacattaaatacacatgattaaaatgtctcaagaataaaaaaaaaaaacatgtggta 394
Query: 299 tatatttatatacaaaaatgcctttgtaatcaggagtctaagatcccaccactaggagtg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 tatatttatatacaaaaatgcctttgtaatcaggagtctaagatcccaccactatgagtg 334
Query: 359 agctgatatttttccaagtatgagagagtgtatattaattcactgtaactgtcaatgaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agctgatatttttccaagtatgagagagtgtatattaattcactgtaactgtcaatgaac 274
Query: 419 cactggagactagcatatgtatgagtaaggattcctttcaaactcttcatgcttgtatac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cactggagactagcatatgtatgagtaaggattcctttcaaactcttcatgcttgtatac 214
Query: 479 ggaagaagcacca 491
|||||||||||||
Sbjct: 213 ggaagaagcacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 893
Length adjustment: 10
Effective length of query: 481
Effective length of database: 883
Effective search space: 424723
Effective search space used: 424723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_b18.g1 MSMg01no155_b18.g1 CHROMAT_FILE:
MSMg01no155_b18.g1 PHD_FILE: MSMg01no155_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:57 2005
(501 letters)
>mm_chr2_68643847_68644743
Length = 897
Score = 872 bits (451), Expect = 0.0
Identities = 487/501 (97%), Gaps = 4/501 (0%)
Strand = Plus / Plus
Query: 1 ccttagggcattctctcagttaggacatcatgaatggcaataagtaaagcctgtcccacg 60
||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ccttagggcattctctctgtcaggacatcatgaatggcaataagtaaagcccgtcccacg 260
Query: 61 ttgttctggaaacaacatctttaccagagagcccctgagaaatgtctggaactgagtaac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttgttctggaaacaacatctttaccagagagcccctgagaaatgtctggaactgagcaac 320
Query: 121 tttgcagagctcagaaatcatcccacttggttggctgcccagaatgcctcaggaaagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcagagctcagaaatcatcccacttggttggctgcccagaatgcctcaggaaagcat 380
Query: 181 cagctagaaggaacagtcactgaggaattgtacactcctccatgcctgacctctctagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctagaaggaacagtcactgaggaattgtacactcctccatgcctgacctctctagct 440
Query: 241 tctcttcattggaagagaaatattccgatcaggaaacttcaacacaatcgtagtatttcc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tctcttcattggaagagaaatattccgatcaggaaacttcgacacaatcgtagtatttcc 500
Query: 301 tgtgtgtgtgtgtgtcttacttttttttttcccctaaaataagcaaacccatcttccagc 360
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgt----cttacttttttttttttcctaaaataagcaaacccatcttccagc 556
Query: 361 atgtgactctctctgccaagataatatcgtttggaaaggtatcttcagaaagtttcccag 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgtgactctttctgccaagataatatcgtttggaaaggtatcttcagaaagtttcccag 616
Query: 421 gcaactaaaacgttggcaggatatcactgagaatcatatgaaaataacgagcagagagag 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcaactaaaacattggcaggatatcactgagaatcatatgaaaataacgagcagagagag 676
Query: 481 gaggcggagagagcgtatcag 501
|||| ||||||||||||||||
Sbjct: 677 gaggtggagagagcgtatcag 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 897
Length adjustment: 10
Effective length of query: 491
Effective length of database: 887
Effective search space: 435517
Effective search space used: 435517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
