BAC Information

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BAC

Clone NameMSMg01-155K13
Chromosome2 (Build37)
Map Location 167,765,685 - 167,925,865
singlet/doubletdoublet
Overlap genePtpn1, 2310033K02Rik, Pard6b
Upstream geneCse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728
Downstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K13.T7 (MSMg01no155_k13.b1)MSMg01-155K13.TJ (MSMg01no155_k13.g1)
ACCAG356609AG356610
length731737
length of high quality
(start - end)
433 (47 - 479)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no155_k13.b1 PHD_FILE: MSMg01no155_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:36 2005CHROMAT_FILE: MSMg01no155_k13.g1 PHD_FILE: MSMg01no155_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,765,685 - 167,766,113)(167,925,601 - 167,925,865)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGAGACTTCCGTCATATTCCACCATACTTGACACATCTCAAGC
CTCTTCTGACAATCTGTAGATTCTGAATGACTGGCAACAGGGCCATATCT
CACAGGATGCCTTTCCCATTCTAAGCCTGAGTCTAACGCTCCTACGGCTT
TGGCATAGGTCACACTGCAGACACTGTAGACAGGCCACTCTTGTGAGTGA
GGGCTGCTCAGCTTTGTGTGTGATGGTTCACTTCCAAGTGCTCAGGATGC
TGTTTAGTCTGTGACTGGAGCTTTCTGGACCCCAACACTCAACTAGCTAG
CAACTGCTTTAAGACCTGAGCCCTGCAGTGTATACCAGGAGTCAGCATTA
GCTTGCTGGCTAAGTGATGGCTCTAGGTTTTCTCTGGGAAAAATACGCAT
GTTTGTGTTCTTTTCATCCACCTGCAAGTCCATGTCAGGAACGCCTGATG
AGCCACCAGAGAAGGTGCTTTGGGGACCAAATGCTCTTATGCCCTTAACA
ACTCCTCTCTCTGTCTCGAGCTGCTTTTCTATCTATGGAGACCCCTGGGC
TATGCCTGTGCCCTTCTCCGGCTTGATTGTACTGCCTACTTTATGCCTTA
CCTGTTTTTCCCCCCACCCTTCCCGATATTGCTTCGCCACTTTTTCAATA
CACTCTCCTCGTTTACGCCTCCGCCCCTTTG
CGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACAGTCACAGGTTCACTGCACCC
AGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATT
GGATCAAGACTTCATTTCTGCCGGCTCTTACTACGAGGAAAAAGTCCTTC
AACTCGGAGTCAGTACACACCTATGAGGCACCCACACTCGGTCACCACAA
GGTTAAGAAATAAATAACTGTCCCCCTCAGAGCCTTGGGCCTCAGGGAAG
TCTGAGCCACACACGTGGGCCTCGCTGACTGTGCATGCAACAGTAGGGAG
TCAGGTAAGGGAAGACAACTGCGGTCCCCTCATCCCAAATGGACGCACAC
AAGAGAATAAATAGACTCCAATAATCACCATCCCTGCGAGTGGCGTACTT
GACACGCTTCTCCCCAAATGTGGGCAGCACCCTCGAATCCCCTTTACGAC
AACTCTGTCTCTTCGTTATAAAGCGTACATCTATATCGTGCGCCAGTTTC
TCATACTGCTTTCCTCTTTATCCCACGATTCACTCTGCCCGTTACACTGT
ACATTGCGTTATTCAACTAACTACGCTACTCTTTACCTTCCTCCTTTTTC
CTTTTCCCCTTTCCCCCTTTTTTTACTTTCCCTTTTACCTTTTTCCCCCC
CTTTCCATTTTCCCTCCCGAATACCCCCCTTTTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k13.b1 MSMg01no155_k13.b1 CHROMAT_FILE:
MSMg01no155_k13.b1 PHD_FILE: MSMg01no155_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:36 2005
         (433 letters)



>mm_chr2_167765481_167766313
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgagacttccgtcatattccaccatacttgacacatctcaagcctcttctgac 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgagacttgagtcatattccaccatacttgacacatctcaagcctcttctgac 264

                                                                       
Query: 65  aatctgtagattctgaatgactggcaacagggccatatctcacaggatgcctttcccatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatctgtagattctgaatgactggcaacagggccatatctcacaggatgcctttcccatt 324

                                                                       
Query: 125 ctaagcctgagtctaacgctcctacggctttggcataggtcacactgcagacactgtaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaagcctgagtctaacgctcctacggctttggcataggtcacactgcagacactgtaga 384

                                                                       
Query: 185 caggccactcttgtgagtgagggctgctcagctttgtgtgtgatggttcacttccaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggccactcttgtgagtgagggctgctcagctttgtgtgtgatggttcacttccaagtg 444

                                                                       
Query: 245 ctcaggatgctgtttagtctgtgactggagctttctggaccccaacactcaactagctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcaggatgctgtttagtctgtgactggagctttctggaccccaacactcaactagctag 504

                                                                       
Query: 305 caactgctttaagacctgagccctgcagtgtataccaggagtcagcattagcttgctggc 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 caactgctttaagacctgagccctgcagtgtgtaccaggagtcagcattagcttgctggc 564

                                                                       
Query: 365 taagtgatggctctaggttttctctgggaaaaatacgcatgtttgtgttcttttcatcca 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 taagtgatggctctaggttttctctgggaaaaatacgcatgttcgtgttcttttcatcca 624

                    
Query: 425 cctgcaagt 433
           |||||||||
Sbjct: 625 cctgcaagt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_k13.g1 MSMg01no155_k13.g1 CHROMAT_FILE:
MSMg01no155_k13.g1 PHD_FILE: MSMg01no155_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:36 2005
         (265 letters)



>mm_chr2_167925401_167926065
          Length = 665

 Score =  489 bits (253), Expect = e-143
 Identities = 262/265 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtcacaggttcactgcacccagcctccgccaggcgcctgcagataactcgctcagt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aacagtcacaggctcactgcacccagcctccgccaggcgcctgcagataactcgctcagt 406

                                                                       
Query: 61  cagtgcccttcattggatcaagacttcatttctgccggctcttactacgaggaaaaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagtgcccttcattggatcaagacttcatttctgccggctcttactacgaggaaaaagtc 346

                                                                       
Query: 121 cttcaactcggagtcagtacacacctatgaggcacccacactcggtcaccacaaggttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 345 cttcaactcggagtcagtacacacctatgaggcacccacactcggccaccacaaggttaa 286

                                                                       
Query: 181 gaaataaataactgtccccctcagagccttgggcctcagggaagtctgagccacacacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaaataaataactgtccccctcagagccttgggcctcagggaagtctgagccacacacgt 226

                                    
Query: 241 gggcctcgctgactgtgcatgcaac 265
           ||| |||||||||||||||||||||
Sbjct: 225 gggtctcgctgactgtgcatgcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)