BAC Information

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BAC

Clone NameMSMg01-155O11
Chromosome2 (Build37)
Map Location 28,252,525 - 28,445,735
singlet/doubletdoublet
Overlap geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5
Upstream geneVav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb, Olfm1
Downstream geneGfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O11.T7 (MSMg01no155_o11.b1)MSMg01-155O11.TJ (MSMg01no155_o11.g1)
ACCAG356787AG356788
length735739
length of high quality
(start - end)
370 (41 - 410)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no155_o11.b1 PHD_FILE: MSMg01no155_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005CHROMAT_FILE: MSMg01no155_o11.g1 PHD_FILE: MSMg01no155_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,445,375 - 28,445,735)(28,252,525 - 28,252,864)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTTTAAGCTGCCTGAAACGCTCTATATCGGCTGGAGATGCAGCTCAGT
GGTTAAGGACCCAGGTTCAATTCCAAGCACCTACATGGTGGCTCACAACC
ATTTGTACCTCCAGTCCCAGGGGATTTGATGACCTCTTCATTTTTACAGT
ATTTGTCTTTAATGGAGCAAAGATTCATATTATGACTTATAAGTAGTCAC
TAAAAATGCATATATTAGAGGAAACATAGAACATAAAATGTAAATAGTAT
AGGGGGGCTGGAGAGATGGTTCTGCTGTTAATAACACTTGCTGCTCTTGC
AAAGGACCTGGGTTTGGTCCCAGAAGCCACATGGCAGCTCACAACCACCT
GTAACTCTATCCTNCCCGATCTGACTTTTTGGATCTTCTGGGCACCTTCA
CTTATCACACACACACACACACATACACACACACATATATACACACACAC
ACACACTCTCGCGCGTGCGCATATAATTAAAAACTAGAACAGATCTCAAT
ATTTAACATCACCATTATGAATCAATCACAGTTTATTTCAATATACCAAC
CAGGTTTGACATATTTATAACTACATGCTCGAGTTGACTCCACCTTTATT
ACCACTCGCTTATTTTGCTACGCTTTACTTATTTTTCTTTTCCCATTTTG
TCCTTCACATTTTCAATTTTCCTCTCCACTTTTTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGACAGCATCCCAGCCAGCAA
GAAGCAGGGCTCCACTGGCCATAACGCCATCACTCATCTCATGACTAAAG
GAGACAGGCTTGCCAAGGGGTGGCACTAGTGAACACAGCACAGACCTGGC
TTAAGGCTGTGGACAACAGGCCTCCACCAAGGGGAGCCCATGAAAATTTA
AAGACATCCTGCTGTCTGCCAAAGAGCATCATTTTAAGGCAGGCAAGCAG
GGGCTGCTGTTCCTCTAACTTCCTTCCTCTCATGACTGGGAATGCCTGCC
ACTACCCTCCAAGGCGAGAAGATGTCAGGGGGTGGCTCCCAAACCTGGAT
TTCTCAAGCCTCCTTCCCCCCCCCCCAGCCTTCATTCTCCCACTGTGGTC
TTCCCCAGGCTCAAAAAGAGGGTACTGCCCCTCATCCCAGGACTTCTCCC
TGGCGGTCTTCAAGGCAAAGCGCTTAGCCATTGGTCTAGTGACCAGCGCC
CTCTAGATAAGGCTGCTTCACACCTCCACGCCCTTCCAAGCTGCTTTCCA
GACCTTATTTCCCTGTTATGAGAACACAGGAAAACCTCATTACTTCAGAC
ACTGTTACTTATGCCCTTGCGACCTCTCTGCCTTACCCTTTTTCATCTGT
CCTTCGTTTTCTCTACCGACCCTGTTCATGACTTTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o11.b1 MSMg01no155_o11.b1 CHROMAT_FILE:
MSMg01no155_o11.b1 PHD_FILE: MSMg01no155_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:54 2005
         (370 letters)



>mm_chr2_28445130_28445899
          Length = 770

 Score =  675 bits (349), Expect = 0.0
 Identities = 358/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctttaagctgcctgaaacgctctatatcggctggagatgcagctcagtggttaa 66
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattctttaagctgattgaaacgctctatatcggctggagatgcagctcagtggttaa 547

                                                                       
Query: 67  ggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccagtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccagtc 487

                                                                       
Query: 127 ccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagattc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagattc 427

                                                                       
Query: 187 atattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacataa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacataa 367

                                                                       
Query: 247 aatgtaaatagtataggggggctggagagatggttctgctgttaataacacttgctgctc 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 366 aatgtaaatagtataggggggctggagagatggctctgctgttaataacacttgctgctc 307

                                                                       
Query: 307 ttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaact 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaact 247

            
Query: 367 c 367
           |
Sbjct: 246 c 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_o11.g1 MSMg01no155_o11.g1 CHROMAT_FILE:
MSMg01no155_o11.g1 PHD_FILE: MSMg01no155_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:54 2005
         (341 letters)



>mm_chr2_28252325_28253065
          Length = 741

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgacagcatcccagccagcaagaagcagggctccactggccataacgccatcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 actctgacagcatcccagccagcaagaagcagggctccactggccataaagccatcactc 260

                                                                       
Query: 61  atctcatgactaaaggagacaggcttgccaaggggtggcactagtgaacacagcacagac 120
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atctcgtgactaaaggagacaggcttgccaaggggtggcactcgtgaacacagcacagac 320

                                                                       
Query: 121 ctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaagac 380

                                                                       
Query: 181 atcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcctc 440

                                                                       
Query: 241 taacttccttcctctcatgactgggaatgcctgccactaccctccaaggcgagaagatgt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 441 taacttccttcctctcatgactgggaatgcctgtcactaccctccaaggtgagaagatgt 500

                                                   
Query: 301 cagggggtggctcccaaacctggatttctcaagcctcctt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggggtggctcccaaacctggatttctcaagcctcctt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)