BAC Information

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BAC

Clone NameMSMg01-156B12
Chromosome2 (Build37)
Map Location 95,513,158 - 95,513,498
singlet/doubletsinglet
Overlap geneLOC100042843
Upstream geneLOC100043259
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156B12.T7 (MSMg01no156_b12.b1)MSMg01-156B12.TJ (MSMg01no156_b12.g1)
ACCAG356921AG356922
length723757
length of high quality
(start - end)
318 (45 - 362)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no156_b12.b1 PHD_FILE: MSMg01no156_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:08 2005CHROMAT_FILE: MSMg01no156_b12.g1 PHD_FILE: MSMg01no156_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGTGAGGAATGGCAGAGAAACACCTGAAAAAATGTTCAACATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATAAAAAATTCAGATGACAGCAGATGCTGG
TGAGGTTGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTTTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAACTGG
ACATAGTACTACTGGAGGATCCTGTAATACCTCTTCTGGGCATATTTCCA
GAAGATGTTCCTTTTTTATAAGACCGCACACCTGCTCTACTATATTCATA
GCAGCATTATTTATAATGCCCCCACACCTGGAAAGAACCCAGATGCCCCT
CAACAGAGTAATGGATACAGAAAATGTGGTACATTTACACAATGGATTAC
TACTCAGCTATTAAAAAGAATGAGTGTATGAAATTCCTAGGCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCCTTCTCACAGGAACC
CACACTACATGCACTCACTGATAAGTGGACATTAGCCCACAAACTTATGG
TACCAAGATATAAAATACAATTTGCCACACGCATAATTCTCAAGAAGAAC
GAAGACCATAGTGTGTACACTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATCACACAAAGAAAAAGAGC
TGTTTCCATGAAGACTGCACATGAGCTTTTGGGTTTAATTCTCTGTAATG
TAGTTTGTGTTACTTCAATATCTTACAGGAAGTAAGTTGAATAGACAGGG
ACTATTATTTTTTAACTCCTCACTTCACTTTTTAGTGTTTTATGGTATTG
CAGATCAGGACTCAACAGATCAGGATTTGGTAAGGAAAGTTTGGATAAAT
ACCAAATAGTACTTAGTGGAATGAAAATTGGCATCTCATCCATGTGATAT
TTCATTTTTCAGAAAGAATCACAAATATCTGTATTTAGAACAGATTGCAA
TCCATTTATATAAGTAAATACCCCACCTTGACATTAGTTTGTTATGTTGT
TGTATCATGTGCTATTTTTTTCTCCATTTCATCCGTCACTCTCTCCTCCT
GCCTGTGACTATCTCTTGCCCCTACCGCACTTTTTCTCAACTCCTGTTCT
TATTATTCTATCTTTTTTTCCCTTCCCTCCCCCCTTTTGGCCTTTTTCGT
CTTTCCTTATCTTTTTTCCTCCTTCCTCTCTCCTCCCCCACCCCCTTCTC
CTCTTTTTCTCTTTTTTCCCTCTCCCCCTCGCCCTTTTCCTCCCTTTTTT
CCTTTTTCCCGCCTTTACTTTTCTCNCCCCTTATTATTTTCTCCTCTCTT
ATCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_b12.g1 MSMg01no156_b12.g1 CHROMAT_FILE:
MSMg01no156_b12.g1 PHD_FILE: MSMg01no156_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:08 2005
         (341 letters)



>mm_chr2_95512958_95513698
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaatcacacaaagaaaaagagctgtttccatgaagactgcacatgagcttttgggttt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatcacacaaagaaaaatagctgtttccatgaagactgcacatgagcttttgggttt 260

                                                                       
Query: 61  aattctctgtaatgtagtttgtgttacttcaatatcttacaggaagtaagttgaatagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aattctctgtaatgtagtttgtgttacttcaatatcttacaggaagtaagttgaatacac 320

                                                                       
Query: 121 agggactattattttttaactcctcacttcactttttagtgttttatggtattgcagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggactattattttttaactcctcacttcactttttagtgttttatggtattgcagatc 380

                                                                       
Query: 181 aggactcaacagatcaggatttggtaaggaaagtttggataaataccaaatagtacttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggactcaacagatcaggatttggtaaggaaagtttggataaataccaaatagtacttag 440

                                                                       
Query: 241 tggaatgaaaattggcatctcatccatgtgatatttcatttttcagaaagaatcacaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaatgaaaattggcatctcatccatgtgatatttcatttttcagaaagaatcacaaat 500

                                                    
Query: 301 atctgtatttagaacagattgcaatccatttatataagtaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgtatttagaacagattgcaatccatttatataagtaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)