BAC Information

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BAC

Clone NameMSMg01-156C15
Chromosome2 (Build37)
Map Location 170,974,461 - 170,974,773
singlet/doubletsinglet
Overlap genenone
Upstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043743, LOC100043744, Cbln4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156C15.T7 (MSMg01no156_c15.b1)MSMg01-156C15.TJ (MSMg01no156_c15.g1)
ACCAG356973AG356974
length733855
length of high quality
(start - end)
319 (37 - 355)41 (76 - 116)
definitionCHROMAT_FILE: MSMg01no156_c15.b1 PHD_FILE: MSMg01no156_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:13 2005CHROMAT_FILE: MSMg01no156_c15.g1 PHD_FILE: MSMg01no156_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGA
ATGAAGCATGTTTTAGAGATCCCTCCTTCCAGTGGTGCTATTGACAATGA
ACCCCAAGAAATGCAGATCCATATGTGAGAATGGTGGATCAATAAAGTAC
AATAATCTCACATGAGAGGAAACCAGAAAGGAATGAGCTGGGACAGCAAA
GAGGTGATACACATTCAAGAGCCTAAGAGAGATGGTGCAGAGGTTAAGAG
CCCTGGTTGCTCTGCCAGAGGACCTGGGTTTGATTCCCAGCACCCACATG
GTGGTTCACAACTGTCTATGACTCCATTTCCAGGGGAATCTGATGCCCTC
TTCTGTGTTTTTGAGCACCCCCCCCTCGTAGTTGCACAGGGATACATACA
ATCGAAATATCTATACAGATAAAATAATGTTAAACAATTTAAAGAAGCTA
AAATGGCTAGAGAGCAATGATAAAGGGTGACAGAAAAATCTTACAGAATG
GAAGAGATTAGCCAGGACTTATCTGTGGCTTTGGACTTTATCTTTAAAGA
CAGTTGTTGAAAAGTTTTGTGTGGAATAGAGACTTAATCAATGCTTGTCT
AGTTTGTGCTGCTCAGCATCTTTCCTTCATCCCATACTTGATCCTTTATT
GGGTGTAACCTGATGATCAGTATCCTATCCTGCACCGCCAAAGTAAAGAG
GACCTGTGCCTGTCAAGGTCCATCTCTTTGAAA
CAATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGATATGCCTCTATAACTTTCTTT
CCAAGTAGCGTGTGTGTGTGTCCCCCCGTGTGTGTGTGTGTATGTGCGTG
TCACTGCACTTCCCCCCCACACCAAAAAAAAACTAATCCCCCCCCCATAA
TCACTACACAACCACCCACACCAAACCCCAAAAACCAACAACCCAATCTA
CCACCACTCCCCCCCACCCCCTCCCACCCCCCCACACAACCCCCCCCCAC
CCACCTCCCCCCCCCTCCCCACCACCTTTCTCCTCCTCCCCTCCCCCAAC
CCCCCCCCCTCACCCCCAAACAACCTCCATCCCCCCCACCCCCTTAAAAC
ACCATCATCTCACAATAAACCACTTAACTCCCCCCCCCCCCATCTAACAA
TCCACCACCCCACACCCCATCCCCCCCCCCCACCCCCACCCACACCTCCC
CACTCATTAAAAACATCCTCACCCCACCCCCTCCCCCCACCTCCCACCCC
CACCCACCCCCAATCTAAAAACCCCAAACAACTAAATAACCACACACACC
CCCACTCCACACCCCCCACCCCCAACCACCACCACATCTCCACTCCCCCT
CCTACTACCCCCCACCTCTCCTCCCCCCCCTCCCCCCCACCCCTCTCCCC
TCTCCCTCCAACCCCCCCTTAATCATATCACACTCCTCTCCAAACCCCCT
ACCACACTATCCCCAACCCACACAAAACACTCACCCTCCACCCTCCCACC
ACCAACACCCCCCCACGCACAACTCATTCCGACTCACACACACACCCCCT
CCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_c15.b1 MSMg01no156_c15.b1 CHROMAT_FILE:
MSMg01no156_c15.b1 PHD_FILE: MSMg01no156_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:13 2005
         (319 letters)



>mm_chr2_170974255_170974973
          Length = 719

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctagaatgaagcatgttttagagatccctccttccagtggtgctattgacaatgaac 66
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 207 attctagaatgaagcatgttttagagatccctccttccaggggtgctattgacaatgaat 266

                                                                       
Query: 67  cccaagaaatgcagatccatatgtgagaatggtggatcaataaagtacaataatctcaca 126
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cccaagaaatgcagatccagatgtgagaatggtggatcaataaagtacaataatctcaca 326

                                                                       
Query: 127 tgagaggaaaccagaaaggaatgagctgggacagcaaagaggtgatacacattcaagagc 186
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgagaggaaaccagaaaggaatgagctgggacagcaaagaggtgatacacattcaagagc 386

                                                                       
Query: 187 ctaagagagatggtgcagaggttaagagccctggttgctctgccagaggacctgggtttg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaagagagatggtgcagaggttaagagccctggttgctctgccagaggacctgggtttg 446

                                                                       
Query: 247 attcccagcacccacatggtggttcacaactgtctatgactccatttccaggggaatctg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attcccagcacccacatggtggttcacaactgtctatgactccatttccaggggaatctg 506

                        
Query: 307 atgccctcttctg 319
           |||||||||||||
Sbjct: 507 atgccctcttctg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)