BAC Information

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BAC

Clone NameMSMg01-156G16
Chromosome2 (Build37)
Map Location 69,213,771 - 69,214,079
singlet/doubletsinglet
Overlap genenone
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11
Downstream geneDhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156G16.T7 (MSMg01no156_g16.b1)MSMg01-156G16.TJ (MSMg01no156_g16.g1)
ACCAG357164AG357165
length756761
length of high quality
(start - end)
313 (36 - 348)63 (77 - 139)
definitionCHROMAT_FILE: MSMg01no156_g16.b1 PHD_FILE: MSMg01no156_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:32 2005CHROMAT_FILE: MSMg01no156_g16.g1 PHD_FILE: MSMg01no156_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGA
CCTACTTTCTAAGTCTCAAGATCCTTATTCCAGAGGATGTCCTGCCCTAT
GTCCAAAGGTCAAGTTTATATCTTCATAGTTTCTGTTCAAACGTCCATAT
GACATTCCATAAAAATAGTTTCCCCAATAGGTCTTTGGGTTCTCACTTCT
AAAGGTTCCTGGGTCATGAATTTTTCTTGAGATAATCTGTCTTTTGCTGC
AAGGAGTGGCGTTTACAGAGAGCCGGGAGTACAAGCATGAAGAGTAGATG
TTTAGTTTCTTACATGGTCACTACAGAGTTGTTTGTAATTCCAAGATGGA
TCTGTGTCACCACCACCCCCCGACGAGGTGAAGTCTGTAGAGGGTGACTT
ATTACCCCTTCTCTCATTCTAGACATTTAACCTGTGCTTTAAAGACACAG
AGTTCTTAATTCTTTTGGCAGCTAAATCCCTGTTTTACCCGTAGCAAGCA
ACTAGTTATATTTTAAAAGGCAGTAGTTAGATCCTATCTTTGTGATCTGA
AATGGCTGCCATGATCTAATCAAGGGTTCTGCTTATATTGATGACCCCCT
CTTTCTCTTACACCATCACACACATACTTTACACTTATAATTCACATATA
TACACTTAAATACATATATATCTATCCTTATAAATTTTCGCCTGTATTTT
ATTTTATGCTTGTTACATTTTACTCCCTTCTATTCTTACATTTATAGTAC
CATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAA
CTTATAGAGGAGAATGTAGGGAAAAGCCTTGAAAATATGGGTACAGGGGA
AAAATTTCTGAATAGAACAGCAATGGCTTGTGCTGTAAAATCGAGAATCG
ACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACT
GTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTA
TTCTAAATCAGATAGGGGACGAATATCCAGTATATATAAAGAACTCAAGA
AGTGGACTCCATATTTTCTTATCCCCCCCCCACAAAATGGGGCTCAAAGC
TAAACAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGAATCACTTG
AAACAATGTTCAACATCCTTAATCATCAGGGAAATTCAAATCTAAACAAC
CCTGAGATTCAACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAG
GTGACAGCAGATGCTGGTGAGGATATGGAGAAAGAGGAACACTCCTCCAC
TGTTGGGGGTATTGCAAGCTTTTACTACCACTCTGGGAATCAGTCTGGTG
TTTCCCCAGAAAATTGATCATAGTACTACCGGAGGGTCCCGGCATATCTT
TCCTGGGCATATATCCAAAACATGTTCAAACTGGTAAGAAGACACTTGCT
CCACTATGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_g16.b1 MSMg01no156_g16.b1 CHROMAT_FILE:
MSMg01no156_g16.b1 PHD_FILE: MSMg01no156_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:32 2005
         (313 letters)



>mm_chr2_69213567_69214279
          Length = 713

 Score =  543 bits (281), Expect = e-159
 Identities = 302/309 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgacctactttctaagtctcaagatccttattccagaggatgtcctgcccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctttgacctactttctaagtctcaagatccttattccagaggatgtcctgcccta 454

                                                                       
Query: 65  tgtccaaaggtcaagtttatatcttcatagtttctgttcaaacgtccatatgacattcca 124
           ||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||
Sbjct: 453 tgtccaaaggtcaagtttataccttcgtattttctgttcaaatgtccatatgacattcca 394

                                                                       
Query: 125 taaaaatagtttccccaataggtctttgggttctcacttctaaaggttcctgggtcatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 taaaaatagtttccccaataggtctttgggttctcacttctaaaggttcctgggtcatga 334

                                                                       
Query: 185 atttttcttgagataatctgtcttttgctgcaaggagtggcgtttacagagagccgggag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 333 atttttcttgagataatctgtcttttgctgcaaggagtggcgtttacagagagcggggaa 274

                                                                       
Query: 245 tacaagcatgaagagtagatgtttagtttcttacatggtcactacagagttgtttgtaat 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 273 tacaagcatgaagagtagatgtttagtttcttacatggtcaccacagagttgtttgtaat 214

                    
Query: 305 tccaagatg 313
           |||||||||
Sbjct: 213 tccaagatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)