BAC Information

Click to search

BAC

Clone NameMSMg01-156G22
Chromosome2 (Build37)
Map Location 37,061,045 - 37,061,351
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365
Downstream geneOlfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156G22.T7 (MSMg01no156_g22.b1)MSMg01-156G22.TJ (MSMg01no156_g22.g1)
ACCAG357176AG357177
length811803
length of high quality
(start - end)
324 (7 - 330)40 (440 - 479)
definitionCHROMAT_FILE: MSMg01no156_g22.b1 PHD_FILE: MSMg01no156_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:34 2005CHROMAT_FILE: MSMg01no156_g22.g1 PHD_FILE: MSMg01no156_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATAGGGAGAGGATCCGCGGAATTCCAGGTAAACCTGTACAGATATGA
AAACTACTGTAAGTTTCATTTCATTTCTTACTTGCTGGTTATTTCCTGAT
TACTGGAAGATGACAAAGAGAGCAATGGCAGGAACCTTGATGTTACAACT
TAGCCTTTCCTGTGTTCCATCCCATCCCATATATTTTTTACTACATCTTT
AAGGCCAAGTGTCTTATGTGATTCTATTAAAAAAGCTTCTGATCCAGAAG
AACTGGCATTTGTGAGATTTTAATGAATTTGAGAAATATGGAGATAGATA
AATGGATGGATGGATTTATAGATGAATATTTTTTTTTTTCCCCCCCCCCC
CCACCTTTAATATTAATTAATATAGTTAATTTATTTTCCCCCCCCACATA
AAAAAAAAATTTTTTTATTTTCTGTGTGACCAACTTCTTCTTTTCCTCAT
ACCCATCTACAGACCACATACAAATATCTTATAATCATACATATACACAT
ATTCTAACTACATAACTACTTTATTTTTTATCCACCACCATACGATTCTT
TTAACTATTCTAATCACTACTACATATTCTATACTATCATATAAATCTTT
GACCTATCATTTTTAATTTATTTCTACACTTTTCATCCTTTCATCCATCT
CCCCTTTTCTCTATTATATTTACTACTTATATTTTCTTAAATAAACCTAT
TCTTCGCACATTACACATAATATATATCAACTTATTAATTATCTTTTCTT
TCTCATTCTCTTTCTCCTCTTCTCATTTTTTTCTTCCTAAATATCTCTAT
TTCCTTTACTN
NGGGGGNNNTTTGNNNGNNNCCTTTTTCCTCTAACTGNCTCATNNNNNTT
TTCAATGACANTGGTAGCCCGGCGGGCCGCCGGGCCGCCAACATTTAGGG
GAAACTATAAAAGAATCCGCGAAATCCTTGGGGGAATAAAATGGCAAGGA
ATAAGAATAACTCCTCCTTGGAAAGCCGGGAACAATCCTAAGTAAAGGCC
TCCGGGCCCGGGGTTTTGGGGAAGGGGGAAAATTTTAAAGGAAAACTCCA
ATTCCCTAAAAAGTAATAGGCCAACCCAAAAATTAACCCAATGGCCATTA
ACCTTGGGAAAGGGGAATTAACCAGAAAAAAGAACCCTTTCCTTTAAAAT
TTCCCAATTAAGGGACTAAAAATTTTTGAAGAAAAACCAATGGATCCTTA
AAATTTTTCCATTTTTTTTTCCCTCCTCCCCCCCTTTGAATTTGGTAAAT
TTAAAATAACCTTCCAACACCTTTAAAAAAATTGGCCTAAGGATTAACCA
ACCTGGTTTTCCCCAAAAAAAAAACTGGGTTAATGGATCCTTTGGAATGG
TCCCCTTGGAACCAAAGGAATGGATTCCACCCCGGAAATGGATTAAACCC
GGCAATCAACCCCCCAATCCTCCTGGGTGGGGAAGAATTCTTTTGGTTCA
AAAGTTTCCAAAGGGGCGGTAAACGGTAAGTTTAAAAGGCTCCCCGGATT
CAAAAATAAAGGACTTTACGGCTATGGAACTTTCCTTAATAACATTGCTT
TCATGGCGTATGGGAGGTAGTAAGACCTTCCCTTTCCAAGGCAATCTTAA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_g22.b1 MSMg01no156_g22.b1 CHROMAT_FILE:
MSMg01no156_g22.b1 PHD_FILE: MSMg01no156_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:34 2005
         (324 letters)



>mm_chr2_37060830_37061553
          Length = 724

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattccaggtaaacctgtacagatatgaaaactactgtaagtttcatttcatttcttac 75
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattccagataaacccgtacagatatgaaaactactgtaagtttcatttcatttcttac 463

                                                                       
Query: 76  ttgctggttatttcctgattactggaagatgacaaagagagcaatggcaggaaccttgat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttgctggttatttcctgattactggaagatgacaaagagagcaatggcaggaaccttgat 403

                                                                       
Query: 136 gttacaacttagcctttcctgtgttccatcccatcccatatattttttactacatcttta 195
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 402 gttacaacttagcctttcctgtgttccatcccatcccatatatttcttactacatcttta 343

                                                                       
Query: 196 aggccaagtgtcttatgtgattctattaaaaaagcttctgatccagaagaactggcattt 255
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggccaagtgtcttatgtgatactattaaaaaagcttctgatccagaagaactggcattt 283

                                                                       
Query: 256 gtgagattttaatgaatttgagaaatatggagatagataaatggatggatggatttatag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtgagattttaatgaatttgagaaatatggagatagataaatggatggatggatttatag 223

                  
Query: 316 atgaata 322
           |||||||
Sbjct: 222 atgaata 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)