BAC Information

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BAC

Clone NameMSMg01-156I08
Chromosome2 (Build37)
Map Location 62,837,806 - 62,838,088
singlet/doubletsinglet
Overlap geneKcnh7
Upstream geneSlc4a10, Dpp4, Gcg, Fap, Ifih1, Gca
Downstream geneEG667257, Fign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I08.T7 (MSMg01no156_i08.b1)MSMg01-156I08.TJ (MSMg01no156_i08.g1)
ACCAG357240AG357241
length741745
length of high quality
(start - end)
319 (46 - 364)283 (82 - 364)
definitionCHROMAT_FILE: MSMg01no156_i08.b1 PHD_FILE: MSMg01no156_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:40 2005CHROMAT_FILE: MSMg01no156_i08.g1 PHD_FILE: MSMg01no156_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGGCAGTTTTTCCAAGCAGAGCAATTGAGAGAGAAGTCAAGAG
AAGCCAGTTTTAACTAGTCAGCTTGGGGAGGAGTTTTGAGCCAGAACAGC
TGAGTGGAAGCAGCCAGACAAAGTTAAAAAAAGAACTATACTATGAGCTT
TTACTGCAGTGAGCCTCCAAGGCAACATCTGCATCTAGCAAATAAAAGTC
TCTTTTACACCTGATCAATGGAACAAGATTTTTCTCTTAAGACAAACATT
TTCAACTCCTTCTTGGATTCTACTCACAGTGTATCATGAATCAGTATGTG
TGTGTGTCTATAACTTTCTATTTATGCGCCTGCCCGTCTGTCTGTCTAAA
GTTTTAGCACAGCAGAGATTTATAGAGGCCTTGTTGCATAAACCTGAGAA
AGCATTTTTCCATAAACAGTCTTAACTTTTGTAACTGTTGCCAAGACAAG
ACATCCAGTCACAGTAGTGAATAGAAACAGTGGTGACATTGGCTTTCTCA
GCTTTCTTCCTCCCACTATCCCTTCATTGAATGGATCATTAAAAGATTGT
GAATTGAAAACAACTGATGCAGGATTCCNTGGTACCCTATGTAAAGTAGC
AAGACCATGATGATTCNCCNCCTCTCAGAATTCCTCCCTTTTTGCTTACT
AAAATTGGAGTTAGTGAGAAGAGCCTAATGTAGCTCACTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCTCAGTAATACACA
GCAGGCTTACCTTGCACACTGCAAGATGTTGGCTATTACAATAAAGTAGG
AAAATAGCATCGTTTCCTTTGGTCAAGGAATCTGTGGGCAAATTCAATGA
GATTAGTGGCTTATGCCCTCATGCATGGACAATATTAATTCTACTTGTGT
TAAAAAAATCTAGAGAGCAAAGATGACCCGTTCTTAAAGATAGATTTGTG
ACATATTAAGTGATGACTATATGACGACAGAGAACACCAACATTCAGACT
TCTTCTCAATATTATTTGTATGGCACCCGAGCCATCCAAACTCAGAAATA
GAATAAAAAAATTATATCACTGTAAAAACAACATTTAGAATAGGATAAAA
CTGTTTTATTCCTAGATCAATGTGGATTTGATAACTATCAGGAAATAGAG
ATTGACTTGGCATTTGCACTCTGATTGACAGCAGTCGACACAGGCGATGA
CATCATGAAAACAGGATAATTTAGGAAAAAACAAGAGAGATGAATTCATT
TTCAGAAAATTAATTTCCCCAAAAAGGTTCCTGTCCAATCTCGGAAATTC
TTTTTTTCCGGGGGAAACACATTTTTTGGGGCAACTATTTTCCCACACCA
AAATAATGAGGGTTCTTCATTTCACCCCCTACTAGTCATATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i08.g1 MSMg01no156_i08.g1 CHROMAT_FILE:
MSMg01no156_i08.g1 PHD_FILE: MSMg01no156_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:40 2005
         (283 letters)



>mm_chr2_62837606_62838288
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcctcagtaatacacagcaggcttaccttgcacactgcaagatgttggctattacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtgcctcagtaatacacagcaggcttaccttgcacactgcaagatgttggctattacaa 424

                                                                       
Query: 61  taaagtaggaaaatagcatcgtttcctttggtcaaggaatctgtgggcaaattcaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taaagtaggaaaatagcatcgtttcctttggtcaaggaatctgtgggcaaattcaatgag 364

                                                                       
Query: 121 attagtggcttatgccctcatgcatggacaatattaattctacttgtgttaaaaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attagtggcttatgccctcatgcatggacaatattaattctacttgtgttaaaaaaatct 304

                                                                       
Query: 181 agagagcaaagatgacccgttcttaaagatagatttgtgacatattaagtgatgactata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 303 agagagcaaagatgacccgttcttaaagatagatttgtgacatattaagtgatgactatg 244

                                                      
Query: 241 tgacgacagagaacaccaacattcagacttcttctcaatatta 283
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 243 tgacgacagagaacaccaacattcagacttctgctcaatatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)