BAC Information

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BAC

Clone NameMSMg01-156O08
Chromosome2 (Build37)
Map Location 79,608,080 - 79,608,318
singlet/doubletsinglet
Overlap genePpp1r1c
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O08.T7 (MSMg01no156_o08.b1)MSMg01-156O08.TJ (MSMg01no156_o08.g1)
ACCAG357519AG357520
length745874
length of high quality
(start - end)
316 (22 - 337)240 (127 - 366)
definitionCHROMAT_FILE: MSMg01no156_o08.b1 PHD_FILE: MSMg01no156_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:08 2005CHROMAT_FILE: MSMg01no156_o08.g1 PHD_FILE: MSMg01no156_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAAATTCTTAGGCAAAT
GGATAGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCGCAAAAG
AACACACATGGTATCCACTCACTGATGAGTGGATATTAGCCCAGAAGCTC
AGAATACCCAAGATACAATTTACAGACCACATGAAACTCAAAAAGAAGGA
AGACCAAAGTGTGGGTGCTTTGGTCCTTCTTAGAAGGAGAACAAAATACT
CACCGGAGCAAATATGGAGATAAAATGTAGAGCAGAGACTGAAGGAAAGG
TCTTCCAGAAACTGCCCCACCTGGGGATTCATCCCACATTTTTTTACTAC
CCCCCCCCCCTATTGTGGATGACAAGAAGTGCATGCTGACAGGACCCTGA
TATGAAAGACTCCTGAGAGGCTCTGCCAAAGCCTTACCAATACAGAGGTG
GATGCTTGCAGCCAACCATTGGATTGAGCGTGGGGTCCCCAATAGAGGAG
TTACAGAAAGGACGAAGGAGTTGATAGGGATTGCAACCCCACAGGAAGAA
CAACAATATCAACTAACCAGTCCCCCAAGAGCTCTCAGGGACTAAGCCAT
CAACAATGGCTCCCGCTGCACAGGATGGCCTTGTCATGCATCATTGGGAG
GAGAGGTCTTTGAACCTTCTATGTGCTACTTTGAAGCCTCATTTGAACAT
AACTCTAACAGCTGGCTAGGTAGTACTATGCCAGTTTGTATCCTT
GGGGGTATAATAAAAATNNTAAATTAACTATTTTTTTTCTTTTTNNCTTA
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCATCTTAAACAGGCATAGT
TCAAAGGACTTAGAATCAGACCAAGGGGGGAAAACCTTCTACAAGAATGA
GGCTATAGACAAAGCCCGGAGACATAACAGTCAAACAATAGCCGTGTATA
TTTCCAAAGAATCAAGCGAAGCTCTGCATTGCTGCAGTGGGGGTGGGAAG
AAGAAAGGGGAAGGAAAGAAAATAGTTGCAGTTGAAGAGGCAGTCAGGTA
AGGGGCCCACCAAAGCCTACTCCAGGGTCTTACTCTGAAATAACTGGAGG
AATTAAACAGGATTTTTATTTGCCCCCCCCCCCCCCCCTAGGGAGTTGTT
GAGGACTTGCCCTGGGGACCACCGAGGTAATAATGAAAAAAAGTAGTTTG
AGGAGAACATGGTTATCACAGCAAGATTTATATTACCAATTGAGTTTTAA
AAATAAATTTAAATTTTTAATATAACCCCTAAGCATCATCCTTTTAAAAT
GAAACGATAGTTATTTTGCAGAATGCCATAAATGCAAAAAACCTTCATGT
TATAAATTATTTTCCCCCTTTAAATATGTTTTATAAAAAGATTGCTTCCA
AAGGTATTAAGGTTTCTCATTCGCTGTAATTCTCTATGGAAAAGAACCTT
TATACTTTTTGTTATTCCCTTTTTCCCTGGTGACCCCCCTTGTCCCTCCT
ACTGGGTTTTCCGCAATGATACCACGCATGTTTTTGTTTCTCCTCGGGTC
CGTGTATATACTTTTACTCTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o08.g1 MSMg01no156_o08.g1 CHROMAT_FILE:
MSMg01no156_o08.g1 PHD_FILE: MSMg01no156_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:08 2005
         (240 letters)



>mm_chr2_79607880_79608519
          Length = 640

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccatcttaaacaggcatagttcaaaggacttagaatcagaccaaggggggaaaacc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 ctcaccatcttaaccaggcatagttcaaaggacttagaatcagaccaagggggaaaaacc 380

                                                                       
Query: 61  ttctacaagaatgaggctatagacaaagcccggagacataacagtcaaacaatagccgtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 ttctacaagaatgaggctatagacaaagcccggagacataacagtcaaacaatagctgtg 320

                                                                       
Query: 121 tatatttccaaagaatcaagcgaagctctgcattgctgcagtgggggtgggaagaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatatttccaaagaatcaagcgaagctctgcattgctgcagtgggggtgggaagaagaaa 260

                                                                      
Query: 181 ggggaaggaaagaaaatagttgcagttgaagaggcagtcaggtaaggggcccaccaaag 239
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggggaaggaaagaaattagttgcagttgaagaggcagtcaggtaaggggcccaccaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)