BAC Information

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BAC

Clone NameMSMg01-157B03
Chromosome2 (Build37)
Map Location 86,944,917 - 86,945,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109
Downstream geneOlfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157B03.T7 (MSMg01no157_b03.b1)MSMg01-157B03.TJ (MSMg01no157_b03.g1)
ACCAG357646AG357647
length730757
length of high quality
(start - end)		689 (42 - 730)283 (72 - 354)
definitionCHROMAT_FILE: MSMg01no157_b03.b1 PHD_FILE: MSMg01no157_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:21 2005CHROMAT_FILE: MSMg01no157_b03.g1 PHD_FILE: MSMg01no157_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATATGCTTAAAAACTGGAATAGCCCTATGCACAGAAAATATTGAAGAC
TATACTTTTTAAAAGGTCCGCTAATATCAAAAAGTCAAGCAGAGTTTCAA
GATACATAGTTAAAACAAAAAAGCATTTGCAGATTCATGCTGCAAAAAGT
TGGGGAAGAGGGAAAACAATTCATAGCATATATAGCTAAATATTGAATTA
ACCCATGAAATGTTAATGAAAGTAATTGAAGATGTGAAAAAATGGAGAAG
TATATAAGATGGACAAACGCTAAAGTAACAAAAAGTTTCAAATTTGTAAT
ATTATACCAGTGTTCATGAAAGTAAAGTGTGGAGAGAGAGAAGGAAATAT
CACATGGGTGTATGTAGTTTGGGAATTAAATGATCAGAGGGAACATTCTG
GATTCTCCAGCTAGAAGAAGGCATAGAGCAAAAGGAACAACATGCAGTAA
AACATCAGAATCATCAGGCCCTTCAGTCCTAAAAGTACAACTCAGTAACT
AATGTGAAGTTGATATCTGTCGTACGTGCCTTGGAACCACTTAATGGTAG
AAATTCAGGTAAATTGGCAGCAATAGTGGAATATCTGAAACTTGAGAATT
AAAATATTTTCTATCCTGACTTTCCTACATATAAACATACAAACTAAAAA
GGTTTTATGTTTTTGATACACTGTTCATTT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTTTGGTCCTAGAGTCAGATGCAGATA
TTAATACCAAACCAATTAGCAGATGCTACTGACCCTGTAGTTGAATTAAG
AAAAACATGGAAGAAGCTCAGGAGGTGGGTGTCCCTGTAAGAGGACCAGC
AGTCTCAATTAACCTGGACCACCACAATCTCTCAGACACTGGACCACCAG
CCACGCAGCATACATCAGTTGATATGAGGCCCTCATCAGGTCTGGGTTCA
GTTAGAGATGATGCACCTAACCCTCAAGGGACTGGAGGCTCCAGGAAGTT
TAGAGGTCTGTTGGCCTGCACTGCGGTGGAAGGTTGNNNNNNNNNNNNTN
NNNNNTTTTCTCCCCCCCCAAAAAAAAAAAAATTCCCTGGTGGTGGGGCC
ATCATCCTACTTTTTTTATCTAACACTTTTTATTTTTATTTTACACCTTT
TCTCTCTTTTATTTCTAACTTTTTCCCTCTTTTTATTATTTCACATCCTA
CTTTATTATTTTTTCTTTATTACGATCTTTTCTTTTTTTTTTCTTTTTCC
GCTCCGTGTCTCTTTTTCTTCTTTTTACAGCCATCTAATTTTTTTACTTC
TTCATTATCCACTTCCTTCTTCCTTTTTTTTATTTTTTTTCATTTATTTA
TTATTTATTATTTTCTTCCTGATCTCTCCCACTTCTTTTTTAATATAATT
TCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_b03.b1 MSMg01no157_b03.b1 CHROMAT_FILE:
MSMg01no157_b03.b1 PHD_FILE: MSMg01no157_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:21 2005
         (689 letters)



>mm_chr2_86944713_86945801
          Length = 1089

 Score = 1278 bits (661), Expect = 0.0
 Identities = 679/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgcttaaaaactggaatagccctatgcacagaaaatattgaagactatac 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatctgcttaaaaactggaatagccctatgcacagaaaatattgaagactatac 264

                                                                       
Query: 65  tttttaaaaggtccgctaatatcaaaaagtcaagcagagtttcaagatacatagttaaaa 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttaaaaggtcatctaatatcaaaaagtcaagcagagtttcaagatacatagttaaaa 324

                                                                       
Query: 125 caaaaaagcatttgcagattcatgctgcaaaaagttggggaagagggaaaacaattcata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaaagcatttgcagattcatgctgcaaaaagttggggaagagggaaaacaattcata 384

                                                                       
Query: 185 gcatatatagctaaatattgaattaacccatgaaatgttaatgaaagtaattgaagatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatatatagctaaatattgaattaacccatgaaatgttaatgaaagtaattgaagatgt 444

                                                                       
Query: 245 gaaaaaatggagaagtatataagatggacaaacgctaaagtaacaaaaagtttcaaattt 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaaaatggagaagtatataagatggacaaacgctaaagtaacaaaaagtttcaaattt 504

                                                                       
Query: 305 gtaatattataccagtgttcatgaaagtaaagtgtggagagagagaaggaaatatcacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaatattataccagtgttcatgaaagtaaagtgtggagagagagaaggaaatatcacat 564

                                                                       
Query: 365 gggtgtatgtagtttgggaattaaatgatcagagggaacattctggattctccagctaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtgtatgtagtttgggaattaaatgatcagagggaacattctggattctccagctaga 624

                                                                       
Query: 425 agaaggcatagagcaaaaggaacaacatgcagtaaaacatcagaatcatcaggcccttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaggcatagagcaaaaggaacaacatgcagtaaaacatcagaatcatcaggcccttca 684

                                                                       
Query: 485 gtcctaaaagtacaactcagtaactaatgtgaagttgatatctgtcgtacgtgccttgga 544
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 gtcctaaaagtacaactcagtaactaatgtgaagttgatatctgtcgtgcgtgccttgga 744

                                                                       
Query: 545 accacttaatggtagaaattcaggtaaattggcagcaatagtggaatatctgaaacttga 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 accacttaatggtagaaattcaggtaaattggcagcaatagtgaaatatctgaaacttga 804

                                                                       
Query: 605 gaattaaaatattttctatcctgactttcctacatataaacatacaaactaaaaaggttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattaaaatattttctatcctgactttcctacatataaacatacaaactaaaaaggttt 864

                                    
Query: 665 tatgtttttgatacactgttcattt 689
           |||||||||||||||||||||||||
Sbjct: 865 tatgtttttgatacactgttcattt 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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