XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GGTAGCATACCCCTTAGTGGAATAATAAATATTCATAGGAGGCATAGGAG
AAAATTTTAGTGATTTAAAGTAGGTGAGAATTTTTTTTTTTTGGTTTGAA
ACAAATAAAAATAAAAATCCCAACACTCAAAAAAGTTCATAAATCAGAAC
CCATTTATATTAATAGACTTTTATATTTGAAAGATATCAACAAGGAAATT
AATTTAATTTTGAAATGTAATCTATTGATTTCATAAAATTAGAAAGATTT
GAAATATAGGTATATGCCAAGAAATTTATATTTATAATGTAAAGAATGAT
TGTAAATCAATACTAGAAAGAAAATACTTAATGAAAATAGCTCATTGTGG
ACACAAACTTTAAATCTTTCATTCTCTCTCTTTTTCTCCCTCTTTCTCTC
TGTCTGCCTGTCTGTATCTATGGGCACCTGAGTATAGCTGTGTGTGCATG
CATGCATATATGTGTGTGTTGTGTGTTTGTTTGTATGTGTGTGTTGTATG
TGTTTGANNNTTNNNNNTNNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTAATNTTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACT
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGTATATATCCAGAACATGCCCCAACAGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACTCAAGATATAAGATATAATTTGCTAAACACAT
GAAACTCAAGGAGAATGAAGACTGAAGTGTGG

Query= MSMg01no157_c05.b1 MSMg01no157_c05.b1 CHROMAT_FILE:
MSMg01no157_c05.b1 PHD_FILE: MSMg01no157_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:26 2005
         (520 letters)



>mm_chr2_55955483_55956398
          Length = 916

 Score =  957 bits (495), Expect = 0.0
 Identities = 510/517 (98%), Gaps = 4/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctggtagcataccccttagtggaataataaatattcataggaggcataggag 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggaattctctggtagcataacccttagtggaataataaatattcataggaggcataggag 522

                                                                       
Query: 64  aaaattttagtgatttaaagtaggtgagaattttttttttttggtttgaaacaaataaaa 123
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 521 aaaattttagtgatttaaagtaggtgagaattttttttt----gtttgaaacaaataaaa 466

                                                                       
Query: 124 ataaaaatcccaacactcaaaaaagttcataaatcagaacccatttatattaatagactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ataaaaatcccaacactcaaaaaagttcataaatcagaacccatttatattaatagactt 406

                                                                       
Query: 184 ttatatttgaaagatatcaacaaggaaattaatttaattttgaaatgtaatctattgatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttatatttgaaagatatcaacaaggaaattaatttaattttgaaatgtaatctattgatt 346

                                                                       
Query: 244 tcataaaattagaaagatttgaaatataggtatatgccaagaaatttatatttataatgt 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcataagattagaaagatttgaaatataggtatatgccaagaaatttatatttataatgt 286

                                                                       
Query: 304 aaagaatgattgtaaatcaatactagaaagaaaatacttaatgaaaatagctcattgtgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 285 aaagaatgattgtaaatcaatactagaaagaaaatacttaatgaaaatagcgcattgtgg 226

                                                                       
Query: 364 acacaaactttaaatctttcattctctctctttttctccctctttctctctgtctgcctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acacaaactttaaatctttcattctctctctttttctccctctttctctctgtctgcctg 166

                                                                       
Query: 424 tctgtatctatgggcacctgagtatagctgtgtgtgcatgcatgcatatatgtgtgtgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tctgtatctatgggcacctgagtatagctgtgtgtgcatgcatgcatatatgtgtgtgtt 106

                                                
Query: 484 gtgtgtttgtttgtatgtgtgtgttgtatgtgtttga 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtgtgtttgtttgtatgtgtgtgttgtatgtgtttga 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 916
Length adjustment: 10
Effective length of query: 510
Effective length of database: 906
Effective search space:   462060
Effective search space used:   462060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)