BAC Information

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BAC

Clone NameMSMg01-157H19
Chromosome2 (Build37)
Map Location 172,834,713 - 172,835,038
singlet/doubletsinglet
Overlap geneRae1
Upstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11
Downstream geneRbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157H19.T7 (MSMg01no157_h19.b1)MSMg01-157H19.TJ (MSMg01no157_h19.g1)
ACCAG357955AG357956
length730729
length of high quality
(start - end)
318 (39 - 356)329 (376 - 704)
definitionCHROMAT_FILE: MSMg01no157_h19.b1 PHD_FILE: MSMg01no157_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:50 2005CHROMAT_FILE: MSMg01no157_h19.g1 PHD_FILE: MSMg01no157_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TCCTCACCCCCTGAGTGACCATGGTTACACCTGCACCAGAAACCCAGCTA
ATTATGGTCTTTAAAATGTCCTGGGGGGCTGGAGAGATGGCTCAGCAGTT
AAGAGTACATACCACTCTTGAGGACCTGAGTTGGGCTCCCAGCACACATG
TTGGTCAGCTCTCGACCAACTCTAACTCTAGGAGATCTGACATTATTATT
GTTTTTTAAGGTAGGATTTCTCTGGGCAGTCCTTGCTGTCCTAGAACTCA
CTGTGTACACCAGGCTGGCCTCTAACTCAGGAGATCCACCTGCCTCTGCT
TCCCGATTGTTGACCCCCCCGCCATGTGCTATCATGACCAACTAGTTTAA
AAAACAAAAACAAAACAAAAAAAACAAGACAAAACAAAACCTTTGTTTTT
AATGCCTTGTTGGGCCAGTAAGATGGCTCAGTGAGTAAAAGCATTTGCTG
GCTAGCCTGATGACCTGAGTTCGATTCCCATGACCCACATCAGGGAAAAA
AAGAATGAACTTCTGCTCAGTTGCCTTTTACTTGTACATAGTGGTGTCAT
ACACACACACACACACACACACACACACACACACACACACTCATACACAC
ACACACACACACACTCATACACACACACAGACACACATTCATACACACAC
ACAGACACACACACTCATACATACACAGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCTTGCAAGAGCCACACAGTAAGATCCT
GTCTTAACAAAGGAAGGACTGAAAGAGACAGGAGGTGTCAAGACAGGAGG
AAATCACTGAGATCATATGACGGGGTGGAGGTGACCATCCATTCTCACTG
GTGACTCCGTGTACTTTCTGAATGTCCATACTTTATAGTTTAAAAACTGT
AAAGCACATAGTGACAAAAGCCTGGAACTTAGGATGCACCAGTAAGAGAA
TCCAGGTTCAGGATGAGATCACACTAAGCTGTGCAGAAAAGAATCCCTAC
CACCAGCATATTGCATGTTAACTACGTGGGTGCTCTGCTTACAGGCGGGG
CTTATCTAGGCTTTCACAAACACTTTGATATTGCTAAATTATAACATTAA
AATTTTGTGACTAAAATGTTGACTGGTCATTTTGGTGTGAAAGCCCTGTC
TTTACCTCAAGTGCCTGTCTTCCTTCTCTTCTCTAGATATACCCGATGGC
TGTGGTAGCCACTGCAGAGAGGGGCCTGATTGTCTATCAGCTGGAGAACC
AGCCCTCTGAGTTCAGGAGAATCGAGTCTCCCCTGAAGCACCAGGTGGGT
GCCACAGCTCTGAGAAGCGCACGGTGAGCGCCTGCCATGTGCAGGGTGGT
GCTCGTGTGGGGTGCACAGGTACGCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_h19.g1 MSMg01no157_h19.g1 CHROMAT_FILE:
MSMg01no157_h19.g1 PHD_FILE: MSMg01no157_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:50 2005
         (329 letters)



>mm_chr2_172834510_172835238
          Length = 729

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggtgctctgcttacaggcggggcttatctaggctttcacaaacactttgatattgctaaa 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggtgctctgcttacaggcggggcttctctaggctttcacaaacactttgatattgctaaa 263

                                                                       
Query: 64  ttataacattaaaattttgtgactaaaatgttgactggtcattttggtgtgaaagccctg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 ttataacattaaaattttgtgactaaaatgttgactggtcattttggtgtgagagccctg 323

                                                                       
Query: 124 tctttacctcaagtgcctgtcttccttctcttctctagatatacccgatggctgtggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttacctcaagtgcctgtcttccttctcttctctagatatacccgatggctgtggtag 383

                                                                       
Query: 184 ccactgcagagaggggcctgattgtctatcagctggagaaccagccctctgagttcagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccactgcagagaggggcctgattgtctatcagctggagaaccagccctctgagttcagga 443

                                                                       
Query: 244 gaatcgagtctcccctgaagcaccaggtgggtgccacagctctgagaagcgcacggtgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaatcgagtctcccctgaagcaccaggtgggtgccacagctctgagaagcgcacggtgag 503

                                     
Query: 304 cgcctgccatgtgcagggtggtgctc 329
           ||||||||||||||||||||||||||
Sbjct: 504 cgcctgccatgtgcagggtggtgctc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)