BAC Information

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BAC

Clone NameMSMg01-157M01
Chromosome2 (Build37)
Map Location 53,033,691 - 53,034,003
singlet/doubletsinglet
Overlap genePrpf40a
Upstream geneNeb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
Downstream geneArl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157M01.T7 (MSMg01no157_m01.b1)MSMg01-157M01.TJ (MSMg01no157_m01.g1)
ACCAG358149AG358150
length716712
length of high quality
(start - end)
316 (40 - 355)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no157_m01.b1 PHD_FILE: MSMg01no157_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:09 2005CHROMAT_FILE: MSMg01no157_m01.g1 PHD_FILE: MSMg01no157_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTCCTTATACTTGATCTTAGATTTTATATTTTCTATAGCAGATAAGGGTT
CAACTCAAGGGTGATGGTCTTTCCCAAAGGGGTGTTTACAAAAATCTACA
TCTTGGCAGTGATTCGTCTGCCAGAGGTGACTGGAACACCAAAAACCTGT
TTTCTCTAAAGTAGTTGGCCTTCATATTTTGAAATAGCCACATAAAATAC
AAACAATCTCTCCTAACATCCATCAAAATTATTTTTTTTAAATAAAAAAT
TTCAACATTTGGCACTGAAAACTAAAGATGGCTTAGCAAATAATCTCTAG
AAACCAATTATAAATTCACCACGCCCATGAAATATAAGGAAGTGTACTTA
CTGCACCAGATGCTGCACCTAAAAGACAAAATATTCACTGGTAAGTGAAA
GGCTCCTCAACAGTTCCAATCCTTATCATTGTTTCTTCCTCTTCATTCTT
ACTAAAGCTTAGGAGCTGTCCTATATTACCTGTTTGCTTGCTTTTCATCC
CGCAAATAAAACATCTATAGTATAAAGCATTTTCAGAACTTGAGCTTTCA
ATCTCCAAAGTTAATTGTCAGCTGCCAAATAAGAAACATTCATTATGCTT
TCTGGCTGTCGATCTCCCCTAAACTCCTTTCTTTATTATATATGCTACTG
AAGTACAACAATGCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTAGCTGCCTTGTAGCACTTTCTGTATAGTT
GAGGCCTCACAACCCCTTCATATTCTGTTATGTTTACATACAGTGTGGTA
CATTTAATATTAGATAACCAATTGATCTGCTTCTCCCTGGGGAAGACTAT
TTCTCCTGTTCTCAGCACTCATTAGCTGCCTTGTAGCACTTTCTGTATAG
TTGAGGCCTCACAACCCCTTCATATTCTGTTATGTTTACATACAGTGTGG
TACATTTAATATTAGATAACCAATTGATCTGCTTGATCCTGGGGAAGACT
ATTTCTTTTGTTCTCCCCCTCCACTAGCTGCCTTGTAGCACTTTCTGTAT
AGCTGAGGCCTCACAACCACTTCATATTCTGTTATGTTTACATACAGTGT
GGTATTAACTACTAATCTGTTGATGGACAGTTGAGTTGTTTCTGTTTTGC
TTATTACTATAATACTAGACACCTGAGCCTTAACGTGGAGTTATGTTTTG
AGTGGCTTTTGGTTACGTTTTCTTTTTCTCAGCATAGTTACTGCCTTATT
ACTCAATATAAAGAAGAAGCTACTATCACCCACTATGGGAGAAACATCCT
CTAACAGAAAAGGTACAAAAATACAGAAACATAGAGGCCCCCAGGGGCTC
ACTCATTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_m01.b1 MSMg01no157_m01.b1 CHROMAT_FILE:
MSMg01no157_m01.b1 PHD_FILE: MSMg01no157_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:09 2005
         (316 letters)



>mm_chr2_53033488_53034203
          Length = 716

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttccttatacttgatcttagattttatattttctatagcagataagggttca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttccttatacttgatcttagattttatattttctatagcagataagggttca 263

                                                                       
Query: 64  actcaagggtgatggtctttcccaaaggggtgtttacaaaaatctacatcttggcagtga 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcaagagtgatggtctttcccaaaggggtgtttacaaaaatctacatcttggcagtga 323

                                                                       
Query: 124 ttcgtctgccagaggtgactggaacaccaaaaacctgttttctctaaagtagttggcctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcgtctgccagaggtgactggaacaccaaaaacctgttttctctaaagtagttggcctt 383

                                                                       
Query: 184 catattttgaaatagccacataaaatacaaacaatctctcctaacatccatcaaaattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catattttgaaatagccacataaaatacaaacaatctctcctaacatccatcaaaattat 443

                                                                       
Query: 244 tttttttaaataaaaaatttcaacatttggcactgaaaactaaagatggcttagcaaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttttaaataaaaaatttcaacatttggcactgaaaactaaagatggcttagcaaata 503

                        
Query: 304 atctctagaaacc 316
           |||||||||||||
Sbjct: 504 atctctagaaacc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)