BAC Information

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BAC

Clone NameMSMg01-157O12
Chromosome2 (Build37)
Map Location 78,088,940 - 78,089,308
singlet/doubletsinglet
Overlap geneOTTMUSG00000016703
Upstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O12.T7 (MSMg01no157_o12.b1)MSMg01-157O12.TJ (MSMg01no157_o12.g1)
ACCAG358262AG358263
length740737
length of high quality
(start - end)
369 (372 - 740)560 (64 - 623)
definitionCHROMAT_FILE: MSMg01no157_o12.b1 PHD_FILE: MSMg01no157_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:20 2005CHROMAT_FILE: MSMg01no157_o12.g1 PHD_FILE: MSMg01no157_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAGAGA
AACAGAAGCAGATAGAACATCCAAGTTGTCAGTTTATGACAAAGCAGGTG
AGAAAAGGATGCTCACCATGTAGGTTGGGTGGTCATAATAAACTATAGTT
TTGACTGCTTGCTGGATGACACCAGTTAATGTGTCCATTGGTTTGGAAGA
GTAAGAGCTCCAGAGACCTGGTATCTTGTGTTGCTCACTAGAAGCTCCTG
GTCCACCGTCATGAACGTTGACAAGGAGCTCATGAGAGAGACTATAGTGG
AGTTGGACTCTACTATCAGCACCTGAGGGCAGAACTATCTGTGACAATTA
TTTGTTACTGCCACCACCCCATCATGAAACCCTTTCTCTGCATTCCTATC
TGAAGTAAAATCTTGAAGTTGCTAAGGAATGTAGAGCTAATCACAATATC
TCTAAAGACAAAAAGGACCTTCTGTGAAGAAGGTTGTCTTACAGAACATA
TTTCCATGCTCTGGAGAAGGAAGGCAGTCATGTTTCCCAAAGGAGCCTGT
TCCAGAACTAAACAATGGTCTGCTAACATTTGAGAAAATACTAGAAAAAG
TTTCCCAAGTTAGCCCAAATAAAGACAGAACTTGACTGCCATCGAAAGGA
GACCAGATAGTATAGAATCCACAATCCACAGCTAACAACAAGTCTAAGAC
TAGGTATGGACAAGGAGAATGGAAGGCTTTCGTCATTCTC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCAATTTTCTAATAGGGTTA
TTTGATTTTCTGGAGTCCATCTTCTTGAGTTTTTTTTTAATATATATTGG
ATATTAGTCCCCTATATGATTTAGGAATGGTAAAGATCCTTTCCAAATCT
ATTGGTGGCCTTTTTGTCTTAGTGACAGTGTCTTTTGCCTTACAGAAGCT
TTGAAATTTTATGAGGTCCCATTTTTCGATTCTCAATCTTACAGCACAAG
CCATTACTCTTCTGTTCAGGATTTTTTCCCCTGTGCCCATATCTTCGAGG
ATTTTCCCCACTTCCCCCCCTATAAGTTTCAGGGTCTCTGGTTTTATGTG
GAGTTCCTTGATCCACTTAAAATTGAGCTTTGTACAAGGAGATACGAATG
GATCAATTCAAGTTCTTTTACATGATAACCACCAGTTAAGTCAGCACCAT
TTGTTGAAAATGCTCTTTTTTTCCACTTGATGGTTTTAGCTCCCTTGTCA
AAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCT
ATTCCATTGATCTACCTGTCTGTCATTGTACAGTACCATGCAGTTTTTAT
CACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTTCCCCAG
AGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o12.b1 MSMg01no157_o12.b1 CHROMAT_FILE:
MSMg01no157_o12.b1 PHD_FILE: MSMg01no157_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:20 2005
         (369 letters)



>mm_chr2_78088740_78089508
          Length = 769

 Score =  714 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgaaaccctttctctgcattcctatctgaagtaaaatcttgaagttgctaaggaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcatgaaaccctttctctgcattcctatctgaagtaaaatcttgaagttgctaaggaatg 510

                                                                       
Query: 61  tagagctaatcacaatatctctaaagacaaaaaggaccttctgtgaagaaggttgtctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tagagctaatcacaatatctctaaagacaaaaaggaccttctgtgaagaaggttgtctta 450

                                                                       
Query: 121 cagaacatatttccatgctctggagaaggaaggcagtcatgtttcccaaaggagcctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagaacatatttccatgctctggagaaggaaggcagtcatgtttcccaaaggagcctgtt 390

                                                                       
Query: 181 ccagaactaaacaatggtctgctaacatttgagaaaatactagaaaaagtttcccaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccagaactaaacaatggtctgctaacatttgagaaaatactagaaaaagtttcccaagtt 330

                                                                       
Query: 241 agcccaaataaagacagaacttgactgccatcgaaaggagaccagatagtatagaatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcccaaataaagacagaacttgactgccatcgaaaggagaccagatagtatagaatcca 270

                                                                       
Query: 301 caatccacagctaacaacaagtctaagactaggtatggacaaggagaatggaaggctttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caatccacagctaacaacaagtctaagactaggtatggacaaggagaatggaaggctttc 210

                    
Query: 361 gtcattctc 369
           |||||||||
Sbjct: 209 gtcattctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)