BAC Information

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BAC

Clone NameMSMg01-158B11
Chromosome2 (Build37)
Map Location 40,515,814 - 40,516,077
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B11.T7 (MSMg01no158_b11.b1)MSMg01-158B11.TJ (MSMg01no158_b11.g1)
ACCAG358400AG358401
length731739
length of high quality
(start - end)
268 (46 - 313)600 (76 - 675)
definitionCHROMAT_FILE: MSMg01no158_b11.b1 PHD_FILE: MSMg01no158_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:34 2005CHROMAT_FILE: MSMg01no158_b11.g1 PHD_FILE: MSMg01no158_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCTCATTCAAGTATCATATCTTCATCCTCATTTGCCCTCTCC
AGACTACTAGCTCCTTGTTTTTCAATGTGGGTGGTAGGTTGCATTCAGTT
TAAACAACTTAGTTAGAAATAGTCTAAATCAAATATATTTTCCCTTTTGT
AATGTCCACATTTTAAACATTGAATACACAAATCTGAGGAAACTAAAAGA
TGGAATGATGAATATTGTACACAAATAAGTGGTGTTTGTCTGCACAGCAA
CAGCTGTTACAGTAGCGGCCGACTTTCACTCCTCCTAGGATTAGGGTGAT
CATAACTTTTGATTATTTTTACACCTCCCTGCATATCATTTTGGATTTAG
ATTTCAGCTGAATTCCCACCCCCCCCTGAAATGACATGTAATTATGGTAT
ATACAGTATACCTCGAAACATTTTTACTGTCCTCCAAAACATCTGTTACC
CAATTCCGCACTCCCCAACTCATATTTTCCTTTTATCCTTCGCTCAAATC
GTTCACCTCCCTTCATTTCACCGCACTTATCCCTCCCCCCGCCTTTTGAT
GCCCCCCCTCTCCCCCTTTATCCCCCACCTTTCCCCGACCCCATTCCCCC
CCATTTGCCGCCGCCTATTCTCCCCCCCTCCTCCCCATGTTCCCATCCTC
CTTTTCCTCCCCCCTTTTCTCTCCCCTCTCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTACAATCAGGATCACAGGAGGG
GCAGGTTCCAGTCAGATACACCCAGGGAAGGTAGTACTAGATATAACCAG
ATGGCAAGAAGCAAGTGTAAGAATATAAGAAACAGAAACCAAGGTTATTT
GGCATCATCACCCAGTCCTCCTACTAAAGGAAGTCCTGGATAGACCAACA
CACCTGAAAAGCAAAATTAGCATTTAAAATCATATCTCATGATGATAATA
GAGGACTGTAAGAAGAACATAAATAACTCCCTTCAAGAAATACAGGAGCA
TACAGGTAATGAGGTAGAAGCCCTTAAAGAGGACACACAAAAAACCTTTT
AGAAAGTTACAGGACAACACAGCCAAACAGGTGTAGGAATTGAACAAAAC
CACTTAGGGTCTAAAAGTGAAAATAGATATCATAAAGAAAGCAAAACGGG
GGCAATCATAAACTTAAAGAGCCAGAAAATATCTTCTACAAAAGTATTGA
AGAAAATTTACTTAACTTAAAGAAAGAGATTCCCATGAACATACAAGAAG
CATAACGAACTCAAAATATGCTGAACCAGAAAATAAAGTCCTCCTGACAC
ATAACAAACAAAATACCAAATGCCCAAAACAAAACAAAACAAAAGAATAT
TAAAAGCAATAAGGGAAAAAGGTCAAGTAACGTATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b11.b1 MSMg01no158_b11.b1 CHROMAT_FILE:
MSMg01no158_b11.b1 PHD_FILE: MSMg01no158_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:34 2005
         (268 letters)



>mm_chr2_40515610_40516277
          Length = 668

 Score =  480 bits (248), Expect = e-140
 Identities = 260/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgctcattcaagtatcatatcttcatcctcatttgccctctccagactacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattcactgctcattcaagtatcatatcttcatcctcatttgccctctccagactacta 409

                                                                       
Query: 65  gctccttgtttttcaatgtgggtggtaggttgcattcagtttaaacaacttagttagaaa 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctccttgttttccaatgtgggtggtaggttgcattcagtttaaacaacttagttagaaa 349

                                                                       
Query: 125 tagtctaaatcaaatatattttcccttttgtaatgtccacattttaaacattgaatacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagtctaaatcaaatatattttcccttttgtaatgtccacattttaaacattgaatacac 289

                                                                       
Query: 185 aaatctgaggaaactaaaagatggaatgatgaatattgtacacaaataagtggtgtttgt 244
           ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 288 aaacctgaggaaactaaaagatggaatgatgaatgttgtacacaaataaatggtgtttgt 229

                                   
Query: 245 ctgcacagcaacagctgttacagt 268
           ||||||||||||||||||||||||
Sbjct: 228 ctgcacagcaacagctgttacagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)