BAC Information

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BAC

Clone NameMSMg01-158K21
Chromosome2 (Build37)
Map Location 174,662,813 - 174,663,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158K21.T7 (MSMg01no158_k21.b1)MSMg01-158K21.TJ (MSMg01no158_k21.g1)
ACCAG358828AG358829
length705709
length of high quality
(start - end)
230 (124 - 353)291 (64 - 354)
definitionCHROMAT_FILE: MSMg01no158_k21.b1 PHD_FILE: MSMg01no158_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:14 2005CHROMAT_FILE: MSMg01no158_k21.g1 PHD_FILE: MSMg01no158_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACACT
ATTATCAATTGGAAGGAACTTGAATTATCTAATATGCCCCCCCATGTTTT
GGGGGAGATTTTTCCAAAAACCTCAAAGACTGTCTCCCAACCACTTCTGT
TCCTAAGGAGCTCCTGTGATGCCTACCAAGCATCCTCTAGCCATTAACCC
TTCATCCAACTGAGGAGTCTGTGATGCAGTGGAAGGCATTTGTGACTCCT
GCCCTCAGAAGCTTGCAATCTCCTGTAGGGCAATCATTAAGCAGCCCCAG
CCCAGCTGATTGTGTATGCACAGGCACAAGCTATCAACAGGTCCCAGGAA
ATTTACTTATTCCCCCCCCCCACCTTATTTAATCAGTACATTTCCCTGGT
ACTGGCACCCCCCTACCATAAAAACCATGAGTGACTTTCCTGGAGCCATT
GTGCTTGGAGGAGCAAAGTGGACCATGGGTGCATCACTTAGAGTTCAAGA
CACTTGGGTACCCTCTTGAGGATCTTGAGATACACCCCCCAGGACATCTG
CAGCCTCCATTATTATGGGGAAAGCCCAAAAGAGTAGGGAGCAGAGATAC
CCCAGAGCCCACTTCATCTTCAAAATGATCTGTGGAGACCCAGGAAGACC
CAGGAACTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAGACGAAATTCAAGACAGTCTATCAGAGGTAAAGCG
GGGAGAGAGAGTAGGAGCAAAGAGGAAACATGGTGCACCAATTAAGCATA
CAGGCCTTTCCACGGGTCTTGAACCCAAGGAAAAGTTAATGTCAGGGAAG
AATACCTAGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAA
AGATCAATCAGCAGAGGTTTCTAGGAGAAGGAACTTGTACCCGCCACTAG
ATGAGTTTAAGCAGCTAGTTCTTAGTAGCTCAGAATCAGATGAAGGACTT
AGCTCCTTTGATTACCCCCCACCGCCAGGAGGAAGCAGTTCGTTATAAGG
GAGAAAGGTACCCCCACCACAAAAAGCGAGCTACTCGGTCCAGAAAAAGG
CAAAAAGTGGCTGGCAAAAGCCAGCTTGCTGCTCAGCCTCCAGACTGTCG
GCTTCAGGGTCCTAGTGCACCTTATCCCTATGTGCAGAGGTACCATTCAG
AGCCTTATGTGCAGAGGTATCATTCAGATTCATTCATTCCAAAAGAGGAA
CACAGAAAAGTGCAGCAAGCGATCCCAGTTTTTGAAGGAGCTGAGGGAGG
GCGTGTTCCCGCTCCAGTAAAGTATATACAGAGGAGCTTGCAGAAGCATT
CGCAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_k21.b1 MSMg01no158_k21.b1 CHROMAT_FILE:
MSMg01no158_k21.b1 PHD_FILE: MSMg01no158_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:14 2005
         (230 letters)



>mm_chr2_174662613_174663242
          Length = 630

 Score =  426 bits (220), Expect = e-124
 Identities = 226/228 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagactgtctcccaaccacttctgttcctaaggagctcctgtgatgcctaccaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagactgtctcccaaccacttctgttcctaaggagctcctgtgatgcctaccaagcat 260

                                                                       
Query: 61  cctctagccattaacccttcatccaactgaggagtctgtgatgcagtggaaggcatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctagccattaacccttcatccaactgaggagtctgtgatgcagtggaaggcatttgt 320

                                                                       
Query: 121 gactcctgccctcagaagcttgcaatctcctgtagggcaatcattaagcagccccagccc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gactcctgccctcagaagcttgcaatctcctgtagggcaatcatcaagcagccccagccc 380

                                                           
Query: 181 agctgattgtgtatgcacaggcacaagctatcaacaggtcccaggaaa 228
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgattgtgtaagcacaggcacaagctatcaacaggtcccaggaaa 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)