BAC Information

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BAC

Clone NameMSMg01-159G24
Chromosome2 (Build37)
Map Location 52,143,367 - 52,285,324
singlet/doubletdoublet
Overlap geneNeb, LOC100041670, Arl5a, Cacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159G24.T7 (MSMg01no159_g24.b1)MSMg01-159G24.TJ (MSMg01no159_g24.g1)
ACCAG359371AG359372
length749751
length of high quality
(start - end)
323 (43 - 365)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no159_g24.b1 PHD_FILE: MSMg01no159_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:10 2005CHROMAT_FILE: MSMg01no159_g24.g1 PHD_FILE: MSMg01no159_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,285,006 - 52,285,324)(52,143,367 - 52,143,659)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGATTCTTCCTCATTTGAAAGTTATAAAGAGTTAAAATGAGAACTG
AGAAGAGTAGCAGATCGTTAGCGTTTCAAGAGTCTTGGGTTATATTTTAA
ATATTTAAATCTCCCAACAAACAGCTCGATCTGTGTTTACGCAGGGGCCT
TTCTTGCCCTGCCTGCATACTACTACATACACTTCATGGAAATCAGTGTG
GATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTC
TGTTCGCACAGGGGTGTCACACAGGTGGGGGTCATTAACGCTATATTGTT
GCATACTATTTTTCTTATTTCTTACCCCACCCCCTGGAACGTTATTAAAA
CGAAAGCATTTTATTGCCACCACAAATCTATGATGATACTTCTGCATTAG
CAGTAGAAAAATAATGTAGCAAAAATATATATTGTACAGTACAAAATTAT
AGTATATATATATATTTTGCCAATAAATGAAAATAGATTGAGGAGAAAGA
AGCACATTTGTTATAGCACAAACTTACAACAAAACCCACTGTTAAATTTG
GCAGTCCTGTTTTTTAGACTTATGTAGATTTGGTTCTCTGTCTTACCAAT
TTATTTCATCTCTCATATTTGTAATTCTGCTGCTTGATATTTTCCAGCAA
TTTATTTCATAGCCTTGCAATCTGTGAGTGTAATTTACTTATTTTATTC
TGACAGCCGGGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAAGCAGGGACTTAGCAGGTCAAAGG
TTGCCAAGAAATCACTGGATATGTCAGAGAACGCACTGTAAACCTGCTGG
GCTCGAAGAGGGACAGGGCTCTGCTTCAGACTTTCAAATTCAATCAAGAG
CGTTTCAGAGTAATGGGTGCAGTGGGCAAAGCTCTGAGGAAGACATCTTC
AGTCCTTGCCTATAAGGAAAGCTATAGTATCTTTATACCCCTTTCTCCCA
TGTAGGCTACACACACAGCTGGTTCCTTTTCTTTTCATTTCATTTCTTTT
CTTTTTTCTTTTCTCATTTTTTGACCCCCCCCCCGCCAGACATGAATGCC
TAAAAGTGTGTTTTTAACGACGACACTCCTTCTAAGAGAATAAATATTCG
CACACACACACACGTGTGTGTGTATATATATATGTATATATCATAGATGA
AATCTTAGATGAAATGACATCAATTGGCTGGAATAATTACAATTATATCC
TAAAAGGGAGTTGCGGTCCCCCTTGGCTTATAAAATATCTGCAGATATAT
AACATTCTCCATTCCATTTAATGCACTGGCAGGGAAGGCAGCCATCTGAA
TTTAACATGTTACTGTCATTCACTTCGCGTTCTCCCTGAAAATAAATGCA
AGCTGTCAGGCAAAGGTGTCAGTGGAGGTAATTTTTGGCCATGACCCAGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_g24.b1 MSMg01no159_g24.b1 CHROMAT_FILE:
MSMg01no159_g24.b1 PHD_FILE: MSMg01no159_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:10 2005
         (323 letters)



>mm_chr2_52284688_52285410
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgattcttcctcatttgaaagttataaagagttaaaatgagaactgagaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaattcactgattcttcctcatttgaaagttataaagagttaaaatgagaactgagaag 578

                                                                       
Query: 64  agtagcagatcgttagcgtttcaagagtcttgggttatattttaaatatttaaatctccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtagcagatcgttagcgtttcaagagtcttgggttatattttaaatatttaaatctccc 518

                                                                       
Query: 124 aacaaacagctcgatctgtgtttacgcaggggcctttcttgccctgcctgcatactacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aacaaacagctcgatctgtgtttacgcaggggcctttcttgccctgcctgcatactacta 458

                                                                       
Query: 184 catacacttcatggaaatcagtgtggattccatacacacagggcatcccggatgcgggga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catacacttcatggaaatcagtgtggattccatacacacagggcatcccggatgcgggga 398

                                                                       
Query: 244 aatcgctgtgagttctgttcgcacaggggtgtcacacaggtgggggtcattaacgctata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatcgctgtgagttctgttcgcacaggggtgtcacacaggtgggggtcattaacgctata 338

                              
Query: 304 ttgttgcatactatttttc 322
           |||||||||||||||||||
Sbjct: 337 ttgttgcatactatttttc 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_g24.g1 MSMg01no159_g24.g1 CHROMAT_FILE:
MSMg01no159_g24.g1 PHD_FILE: MSMg01no159_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:10 2005
         (294 letters)



>mm_chr2_52143167_52143860
          Length = 694

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagcagggacttagcaggtcaaaggttgccaagaaatcactggatatgtcagagaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagcagggacttagcaggtcaaaggttgccaagaaatcactggatatgtcagagaacg 260

                                                                       
Query: 61  cactgtaaacctgctgggctcgaagagggacagggctctgcttcagactttcaaattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgtaaacctgctgggctcgaagagggacagggctctgcttcagactttcaaattcaa 320

                                                                       
Query: 121 tcaagagcgtttcagagtaatgggtgcagtgggcaaagctctgaggaagacatcttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagagcgtttcagagtaatgggtgcagtgggcaaagctctgaggaagacatcttcagt 380

                                                                       
Query: 181 ccttgcctataaggaaagctatagtatctttatacccctttctcccatgtaggctacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgcctataaggaaagctatagtatctttatacccctttctcccatgtaggctacaca 440

                                                                
Query: 241 cacagctggttccttttcttttcatttcatttcttttcttttttcttttctca 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagctggttccttttcttttcatttcatttcttttcttttttcttttctca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)