BAC Information

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BAC

Clone NameMSMg01-159I09
Chromosome2 (Build37)
Map Location 59,672,742 - 59,673,057
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I09.T7 (MSMg01no159_i09.b1)MSMg01-159I09.TJ (MSMg01no159_i09.g1)
ACCAG359436AG359437
length741740
length of high quality
(start - end)
321 (45 - 365)---
definitionCHROMAT_FILE: MSMg01no159_i09.b1 PHD_FILE: MSMg01no159_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:16 2005CHROMAT_FILE: MSMg01no159_i09.g1 PHD_FILE: MSMg01no159_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCTCTCAAAGGTATGGCATGCTGCAGTGCGCTGGCTTCTCTTGC
AGGAAGAACTTTGTACTTTTGGCTCCCCGGTTAGATGTTTTCTAAGGTAT
GATGCAGCCCAGGGGCTGATGGTCCAACTTTGGTGAGGACCCTCTGCCAT
CAGCTCTGCAGACCTGCTCAGGTTAACACGTGGGACCCTCAGCAGCCCAG
GTTTATTCATGTTCTGTGAATGTGTTATTAGTCTTGGGGCAACCTACACC
CCTCTTCAGTATGCCGTTTAAAAGAACCGAATTAAAAGTAGAAAGGCAAG
GGAGATTTACTCTTTGTTTTTACCCCACCCCCCTCTGGAAGCCTCAAGTC
CATCTTTGGAGTCCTGCCCCCCCCCTATATTTAACTCAAGGGCAAGGATA
ATTGCATCTAAGCAGTACTGTTAAAGGTGTGGTCCCACCTGCCATTGATC
CATCAGAGTCTGGACTTACATCTTGTCCTGTTAGGAGCGCCAACAAGTTG
TTAAAACTCTGAAATCTCTTTTGGGAGACAAGTTCTCCCTCTGCCTGGTG
CTTTTCGTTCTCTGGGCATGAGATTCTTGGGGAAATTTCTATTCTTTAGG
ATCTACTGTTCAGCAGTCTGATAGTATATTGCCAGACCCAAGTGTTTCTT
TAGGGCATCTTCGTGCCTGCCATACAGTTATATTGGACTCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAAAGAACCTAAAATACGGGGTTTA
ATACTCGGTTTTCATGGAAAAAGGGCAAAGGGCCCTGATAATTTCCGGGG
AGAAAAGGAAAAAGGGTTTTTCTGGTCCTGCAGCTGACTACAAAGGGATT
TGTGACTTTATTTAAAAAGGCCTTAGAAAGGGAATAAATTGGGCTGCCTT
TGGCACTATTTGACTACACTGGAACACGCTGCCTTGGAAATCAGGAGGCT
CTACTACGCAAACTCAAACAAAGAACAAAACTCTAACTTTGAACGTGAAA
GGGACATCTCTATGTTTGTCTGACCCCCCCCCCGATAACTTGGAAACGAA
GTTGGGCCCGTTCCCACCCCCTCCATTGTAAAATTTCTTTTTTTTTTCTC
AGGACCAAAAAAGGGAAAGGTTACACTGATGAACCTGTATTGACAAAACT
GACCACTTCCTCAGTTCAAATACAAAAATTATTTTCTTGGCATCTGTTCT
AACATCTGAAATTCAAACTACTGAGGGCCTTCTACTCATAACCTTAAAAG
GGTTTTGGGTTCCTGGAAACATCCTGTAGGGTTGGAAAAGTATACCTTAT
TGACGAAATTTTTTATAAAAATTGACTACCTATTTTTGTAACTTTCAAAA
ATGCTGCAATTAGGAATGCTTGGTCTGTTGAATCTTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i09.b1 MSMg01no159_i09.b1 CHROMAT_FILE:
MSMg01no159_i09.b1 PHD_FILE: MSMg01no159_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:16 2005
         (321 letters)



>mm_chr2_59672539_59673260
          Length = 722

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcctctcaaa-ggtatggcatgctgcagtgcgctggcttctcttgcaggaag 62
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcctctcaaaaggtatggcatgctgcagtgcgctggcttctcttgcaggaag 263

                                                                       
Query: 63  aactttgtacttttggctccccggttagatgttttctaaggtatgatgcagcccaggggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactttgtacttttggctccccggttagatgttttctaaggtatgatgcagcccaggggc 323

                                                                       
Query: 123 tgatggtccaactttggtgaggaccctctgccatcagctctgcagacctgctcaggttaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatggtccaactttggtgaggaccctctgccatcagctctgcagacctgctcaggttaa 383

                                                                       
Query: 183 cacgtgggaccctcagcagcccaggtttattcatgttctgtgaatgtgttattagtcttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacgtgggaccctcagcagcccaggtttattcatgttctgtgaatgtgttattagtcttg 443

                                                                       
Query: 243 gggcaacctacacccctcttcagtatgccgtttaaaagaaccgaattaaaagtagaaagg 302
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggcaacgtacacccctcttcagtatgccgtttaaaagaaccgaattaaaagtagaaagg 503

                           
Query: 303 caagggagatttactc 318
           ||||||||||||||||
Sbjct: 504 caagggagatttactc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)