BAC Information

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BAC

Clone NameMSMg01-159J12
Chromosome2 (Build37)
Map Location 49,540,138 - 49,540,446
singlet/doubletsinglet
Overlap geneKif5c
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159J12.T7 (MSMg01no159_j12.b1)MSMg01-159J12.TJ (MSMg01no159_j12.g1)
ACCAG359488AG359489
length735732
length of high quality
(start - end)
315 (44 - 358)---
definitionCHROMAT_FILE: MSMg01no159_j12.b1 PHD_FILE: MSMg01no159_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:21 2005CHROMAT_FILE: MSMg01no159_j12.g1 PHD_FILE: MSMg01no159_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGGTCTCTCCAGCCACCTCGCAAACCTTCCTAATGATTCTGAACA
AAATGAAGAGTACATGGTGCTTAAATGCTGCTGGCCTCTTGCTTTCCCAT
CTCCAGTGTTTGAGGAAACTGTGCACATCCAGGAGACCACGGCAGAGGAC
TCAGAGTCTTGTTGAGTGACCAGCGGACCATGTCCTGGTTCTCCTTCGGG
ACTTGCTCCTGAAAAGCTGCATTCAGTTGGAAAAGTTTCTGGAGAGAGTT
GTACAGAGCACAGCTGTAAAGTGTCCTGTTTACTCCCTTGGTGGAGCGAT
AGACATTTTTTTTCCCTCGCCCCCCGCTCCTCTCTCATCCCTGAGCCATA
GTGTACTTTGCCTGTCTCAAATAGGAAATGCTTGTTTTCAGTTCCTGTTT
TTGCTGCTGCCAGCTCACCCCTGCTGTCCACAGCCTCTGCCCAGCCTAGA
TCTCAATCATCCTGCACACTCTAGGGGCTCCTAAGGAATCCATATTTACT
ACCTCAGCTGGAAGGGCCTTCATGATCACTGAATTCACCTTTTTTCATAG
CCTGGTAACCACATTGTATCTGTGTATGTATGCTTCATCTGGAAGCAGTA
TGATCTTTACACACATGCACATATGCACACACATTCACACACAGAGATAG
TCATTTGTATATAGTATACATTTTCCATATATGTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCCAACTACTGTACTGACGCTGGAT
CTCTTTAGGAATATCTCCTCCAGCACGCGAGGGTTTGCTAAAAAAAAAGG
CGAGCCCAAGGCAGTTTCCAGGGCATCCGGAGAAACCTGTGAGGAGGGAA
GGCAGCCCATAAGCGCTAACTTAAGGGTGGGGGAATTACGCCGGATATGA
TTTAACGGGCCGATGAATTACTCTCACGATAACGGGCCAGCAATTCTGGC
CCATATTGGAAAGCCCGAAAAACTGGATACTTCGGCACGTAAGGCCGGGG
TTCTAACCTTCCGCCCCCAACTCCGGGAGGCTGCAACTCTGCTACGTCGG
GGGCTGGCTAACGGCCCCGGGGGAATGCCATTACGGGAAGCCACTGCATG
GCCTCACCTCCATGACGTTGCAACATTATCTGACGGGGCTCTCCTGAAGC
GGTTGCGAAATGCCGCCAACTGGTTTGGCATACTTGCCGCACAAACACTT
GCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAAAGATTGCGCCT
TGCCAATGGAACAGCAATCAGGGCGCCCGGGGGCGGCAGCGCTGAATGGC
GACTACTTATGGAATATGATCCTCATACCGGTCGGTTCACTGATTTTGAG
CTAACCGACAGCAAAGACGCTGAACGGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_j12.b1 MSMg01no159_j12.b1 CHROMAT_FILE:
MSMg01no159_j12.b1 PHD_FILE: MSMg01no159_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:21 2005
         (315 letters)



>mm_chr2_49539935_49540649
          Length = 715

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtggtctctccagccacctcgcaaaccttcctaatgattctgaacaaaatga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtggtctctccagccacctcgcaaaccttcctaatgattctgaacaaaatga 263

                                                                       
Query: 64  agagtacatggtgcttaaatgctgctggcctcttgctttcccatctccagtgtttgagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagtacatggtgcttaaatgctgctggcctcttgctttcccatctccagtgtttgagga 323

                                                                       
Query: 124 aactgtgcacatccaggagaccacggcagaggactcagagtcttgttgagtgaccagcgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactgtgcacatccaggagaccacggcagaggactcagagtcttgttgagtgaccagcgg 383

                                                                       
Query: 184 accatgtcctggttctccttcgggacttgctcctgaaaagctgcattcagttggaaaagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accatgtcctggttctccttcgggacttgctcctgaaaagctgcattcagttggaaaagt 443

                                                                       
Query: 244 ttctggagagagttgtacagagcacagctgtaaagtgtcctgtttactcccttggtggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctggagagagttgtacagagcacagctgtaaagtgtcctgtttactcccttggtggag 503

                    
Query: 304 cgatagaca 312
           |||||||||
Sbjct: 504 cgatagaca 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)