BAC Information

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BAC

Clone NameMSMg01-159K18
Chromosome2 (Build37)
Map Location 36,286,425 - 36,286,732
singlet/doubletsinglet
Overlap genenone
Upstream geneGgta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339
Downstream geneOlfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K18.T7 (MSMg01no159_k18.b1)MSMg01-159K18.TJ (MSMg01no159_k18.g1)
ACCAG359548AG359549
length743743
length of high quality
(start - end)
324 (46 - 369)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no159_k18.b1 PHD_FILE: MSMg01no159_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:26 2005CHROMAT_FILE: MSMg01no159_k18.g1 PHD_FILE: MSMg01no159_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAATAAGGTTGTACAAAATGTAGTTTTGTTGTCACTTATTGCT
ATATAGCTACTGTCAGAGGTGTTCCAGTTGCAGTTGCGGCGTTAGCACCA
GAACAAGAAGCTAGTCTATTCTGGAGACATACTGACAATTACCTCCACCA
CCAACACTCCACTTAATACAGATCCAGTACTGTTGGCTTGTTACCAGCTG
CAGTTGAAACTATTGGAAGAATAAACATAGAGCTAACCCCAGTAGCACAT
CACAAGCTTCACCATTAGTGGAGTTTGAGAGAGTGTACTGGAAATGAAGC
AACTTTTGTGCCCTTTCTATAGTTACCTCCACCAGCTGAATTAATACATG
GTGAAAAAATGATATTAACCCCTGCCTCTAGATCATATTAGCTGGAATGA
TGTGTTAGGAACCTCACTAGAATGATCATAATGGGTTTTTTTTTTTTGGT
ATAAATTTGCCTAAATCAACTAACTTGCCCATTATTACCTAATGATATTG
TGTTATAATGAATTATTCTGAGAATACAATTTTAATCTAGCTAAATGTAT
TAGATAATTATGATAATAAAATAAAATATGTCTTACATGTAGAAAAACTC
ACTAGAAGGTCATTATATAGGATATTATTTCTTCATTAAATTGTTTGTTA
CATATGTATATATTATATACACCAGTACATGAATTTGGTCACN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGACAATCTCCCTGATGAACAAA
CATCTATAGTTCTCAATAAATTCTTGGAAATCAAATTTAACAATGTATCC
AAAGAAGCATTTGCCATAGCTTCAAGTGGGCTTCATATTAGGTATGCAGA
GATGGTTCAACACACATAAATCAACAAATGTAACTCATAATATGAATAGG
CTCAAAAACACAAATCATCTGGTTTTTTAAAATAATGCATAAAAGACCTT
GGAAAAATACAATATTCTTTCATGATAAAAAAAAAACTGGTGATGCTAGG
GATAAATGAATCATATCTTTTCATACTGCCCCCTCTCTATGACAAGCCAA
TAGCCACCATCTTGTTACATGCCAAAAAAACTGTATGACTGAGCACAAGA
CAAAGTTGTCATATTTCTAGTGAAGTTCTAGCTAGAGCATAAGGGAAGAA
AATAGGAAAGGAAAAATATTAATGCAAAAAAAATAGAACATGTTATATCT
AGAAAGTTCTTGACACAAAACATCCAGGAAATCTGAGATATTTAAAAAAT
AAAACTAAGAGGGTGAAAACAGGATCCATTATTCTCCTGCATACAAAAAA
CACATTTCAACATCAAAGATATATATTACCTAAAAATTAAGAGTTAGAAA
AGATTTTCCAACCAGATGGAAACAAGATGGTATAGCAATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k18.b1 MSMg01no159_k18.b1 CHROMAT_FILE:
MSMg01no159_k18.b1 PHD_FILE: MSMg01no159_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:26 2005
         (324 letters)



>mm_chr2_36286209_36286932
          Length = 724

 Score =  470 bits (243), Expect = e-137
 Identities = 296/321 (92%), Gaps = 14/321 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaataaggttgtacaaaatgtagttttgttgtcacttattg-ctatatagct 63
           |||||||||||||||||||||||||||||||         || | | || | | | | ||
Sbjct: 217 gaattcttgaataaggttgtacaaaatgtag---------caataagtgacaacaaaact 267

                                                                       
Query: 64  actgtcagaggtgttccagttgcagttgcggcgttagcaccagaacaagaagctagtcta 123
           |    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 268 a----cagaggtgttccagttgcagttgcggagttagcaccaaaacaagaagctagtcta 323

                                                                       
Query: 124 ttctggagacatactgacaattacctccaccaccaacactccacttaatacagatccagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctggagacatactgacaattacctccaccaccaacactccacttaatacagatccagt 383

                                                                       
Query: 184 actgttggcttgttaccagctgcagttgaaactattggaagaataaacatagagctaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgttggcttgttaccagctgcagttgaaactattggaagaataaacatagagctaacc 443

                                                                       
Query: 244 ccagtagcacatcacaagcttcaccattagtggagtttgagagagtgtactggaaatgaa 303
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 444 ccagtagcacatcacaagcttcaccattagtggagtttgagacagtttactggaaatgaa 503

                                
Query: 304 gcaacttttgtgccctttcta 324
           |||||||||||||||||||||
Sbjct: 504 gcaacttttgtgccctttcta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)