BAC Information

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BAC

Clone NameMSMg01-159K20
Chromosome2 (Build37)
Map Location 146,233,388 - 146,233,707
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K20.T7 (MSMg01no159_k20.b1)MSMg01-159K20.TJ (MSMg01no159_k20.g1)
ACCAG359552AG359553
length748749
length of high quality
(start - end)
323 (43 - 365)297 (72 - 368)
definitionCHROMAT_FILE: MSMg01no159_k20.b1 PHD_FILE: MSMg01no159_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:26 2005CHROMAT_FILE: MSMg01no159_k20.g1 PHD_FILE: MSMg01no159_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGATAGAAAAAACTAGGCTTTCTTACCCTGCCCTCCAGGTCTCCTAA
GCTTCCTTTCACATTATCCATTCTCCTTGCCTCTATGGATGTAGTCTGGG
TTATTGTCTCACCAATAAAAGTGTCCTCGGTCTTTCAGCAGTTCAATAAA
TCTGACATTAGGAGCAAGCCTTGGAGGTATGTCCTAGGAGCTCCAGATGC
AAGCAGAGTTTCCTTTAGATGTGGCTTTGCACTTGAGGGGTTTGGGCTCT
CACACTTCCCTTGAGGTAGTGTTTTGTTTTGTGCACTTTTGCCTCACTGG
TGTACTTTATGCTTCTGTATTTCCAAGCCCCACGTATATCTTGGAGCTCT
AATAATGTCATTACTTGCCCATTTTTTATTTTCTCATCTTTTATGCATTT
AAAATGCTCACAAATCCTAATTCTGGATTCTCTATCTGATTTGCTGAAAT
CATCTAGGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTC
TCTCTCTCTATCTATCTCTCTCTCTCTTCTGGNACTCTTATGTCTGGTGG
TTTGTTTCCTAAGTTTTTGGTGATCTTTGTTATGTTACCTATTGGGCTGA
TCTAAATCTGTGGAAAACCCAAGTGTCTACCTTAATGAGGACTGTTCAGG
AAAGCATTTGCATTTTCATTTTTAAGCAATCAGGAAGTGCCACTTTGG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTTTTTACTCTAAGGAAGATAGACGC
CTTCAAAAGAGCTTTAGGGAAGTGGAGAATACGTCTAACCTACATTTGTG
TGTATATGGTATGCTTGTGGATGTAGGCACATATGTATATGTATGTATAT
ATATGCAGGTAGAGGAGACCAGAGAACAACACTGGTTGTCTTGCTCTATG
CATGACAAATATACTTAAAAGTACCCAATAGTGGTAACATAAATTCATGA
AGACCTGAATAAATTCAAAGTACAATCTTCATGGGCTGGAAGTTTTTATA
CTTGTTAAGATGTCATTTCTTCTGACCCCCACCTTTAGATTCTAACACAA
ACTCTAAATTCATACAGAACTGGAAAGACAGAAATTAGCTATGACAATTA
TGAGATGATTTATACTGAGTTTGAGGAATAAATATAAAATTACAGTAATT
AAGATATTAAAACATTAATATCAGGATAGATAAATTGACAGATGAAAATA
TACAGCCCAAGAATAGAAGCACATATTATGGCAACTGTTCCACAGTAAGG
CAGGACATTTCTGGGGAAAGGAAGTTTGTTCCGATAAAGACTCTGGAACA
AAGGGAGAGGGGTAAGAAAAAATGAAACCTGATCTCTATTTCATCACACA
CAAAAATCTGAGCTGGATTGTAAACAGAAACATTAATACTAGTACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k20.b1 MSMg01no159_k20.b1 CHROMAT_FILE:
MSMg01no159_k20.b1 PHD_FILE: MSMg01no159_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:26 2005
         (323 letters)



>mm_chr2_146233184_146233907
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagatagaaa-aaactaggctttcttaccctgccctccaggtctcctaagcttc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattctagatagaaacaaactaggctttcttaccctgccctccaggtctcctaagcttc 465

                                                                       
Query: 64  ctttcacattatccattctccttgcctctatggatgtagtctgggttattgtctcaccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctttcacattatccattctccttgcctctatggatgtagtctgggttattgtctcaccaa 405

                                                                       
Query: 124 taaaagtgtcctcggtctttcagcagttcaataaatctgacattaggagcaagccttgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taaaagtgtcctcggtctttcagcagttcaataaatctgacattaggagcaagccttgga 345

                                                                       
Query: 184 ggtatgtcctaggagctccagatgcaagcagagtttcctttagatgtggctttgcacttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtatgtcctaggagctccagatgcaagcagagtttcctttagatgtggctttgcacttg 285

                                                                       
Query: 244 aggggtttgggctctcacacttcccttgaggtagtgttttgttttgtgcacttttgcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aggggtttgggctctcacacttcccttgaggtagtgttttgttttgtgcacttttgcctc 225

                               
Query: 304 actggtgtactttatgcttc 323
           ||||||||||||||||||||
Sbjct: 224 actggtgtactttatgcttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space:   224510
Effective search space used:   224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)