Query= MSMg01no160_a10.b1 MSMg01no160_a10.b1 CHROMAT_FILE:
MSMg01no160_a10.b1 PHD_FILE: MSMg01no160_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:52 2005
(318 letters)
>mm_chr2_52769987_52770702
Length = 716
Score = 578 bits (299), Expect = e-169
Identities = 311/315 (98%), Gaps = 2/315 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgaattcttttttggaagccaaatttatttttataagcctttagcagaatac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgaattcttttttggaagccaaatttatttttataagcctttagcagaatac 263
Query: 64 tgtttgttcttgggcaccaattggctctggccttgtctttcaaatatgctttgaccaacg 123
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttgttcttggg-at-aattggctctggccttgtctttcaaatatgctttgaccaacg 321
Query: 124 accagttgagagaaacaggataaatgaaattgggaaattaagaaaatggctatttttttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 accagttgagagaaacaggataaatgaaattgggaaattaagaaaatggctatttttttt 381
Query: 184 tcttcttaaaatgagaacaaaagtcatgaggggggtcttttatttttcagataattttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcttcttaaaatgagaacaaaagtcatgaggggggtcttttatttttcagataattttta 441
Query: 244 agaacccctgcctttagcagaaaggttttgcttaattgttgtcactctggagagagggga 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 agaacccctgcctttagcagaaaggttttgcttaagtgttgtcactctggagagagggga 501
Query: 304 ggattctgaagtctt 318
|||||||||||||||
Sbjct: 502 ggattctgaagtctt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 716
Length adjustment: 9
Effective length of query: 309
Effective length of database: 707
Effective search space: 218463
Effective search space used: 218463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_a10.g1 MSMg01no160_a10.g1 CHROMAT_FILE:
MSMg01no160_a10.g1 PHD_FILE: MSMg01no160_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:52 2005
(270 letters)
>mm_chr2_52947852_52948521
Length = 670
Score = 491 bits (254), Expect = e-143
Identities = 266/270 (98%)
Strand = Plus / Minus
Query: 1 tcacatacactagctttcattgtgtcaaccatcctccccaagtgaagtaataaaaggcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcacatacactagctttcattgtgtcaaccatcctccccaagtgaagtaataaaaggcta 553
Query: 61 aagcctgtgattggcagtaaagtgagggaggtgggacttcctgggaagaagaaagaaact 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagcctgtgattggcagtaaagagagggaggtgggacttcctgggaagaagaaagaaact 493
Query: 121 ctagaaagaaggaagaagaaggtgactatgggcctagaaggtatggctagtcatggggct 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctaggaagaaggaagaagaaggtgactatgggcctagaaggtatggctagtcatggggct 433
Query: 181 ggatggagctaggtagccaggttaacttaaatgagctagttgagagtctgcccagctaaa 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 432 ggatggagctaggtagccaggttaacttagatgagctagttgagagtctgcccagctaaa 373
Query: 241 gcctaatttttgaaatattaagtaagggtc 270
|||||| |||||||||||||||||||||||
Sbjct: 372 gcctaagttttgaaatattaagtaagggtc 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
