BAC Information

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BAC

Clone NameMSMg01-160A19
Chromosome2 (Build37)
Map Location 34,068,954 - 34,169,617
singlet/doubletdoublet
Overlap genePbx3
Upstream geneRalgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A19.T7 (MSMg01no160_a19.b1)MSMg01-160A19.TJ (MSMg01no160_a19.g1)
ACCAG359822AG359823
length702730
length of high quality
(start - end)
233 (129 - 361)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no160_a19.b1 PHD_FILE: MSMg01no160_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005CHROMAT_FILE: MSMg01no160_a19.g1 PHD_FILE: MSMg01no160_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,169,386 - 34,169,617)(34,068,954 - 34,069,234)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCAATTATCGCTGTCCTGTTTAATTTAATAATACACAAAATATT
ATTTGATGGAATCCTTTATTTTCCCGAGCTATTGTTCAGCTTCTATTTCA
GCTTAGTAAAATCTTACTTGTTCTTTTGTTTTGTTTTGTTTTTTAATTTT
GCAAAACAACAGTGACAAAAAAGCCACCATCTGCTTTACTGCTCACTTGC
CTCATAGAGACGATGTAAAGATTGTTAGATTAAAAAAATTATAGTGAAAC
TCCTTGGAGAGAAGTTCTGATGAACAAAACTGCACCAGCTGTCGATAGTA
AATATTACTGTTGTTCTACAGTTATGTGCGCAGTTATTTAGCTGTGGAAG
TTAGAGCTTTGCGCACCAACTGAGCTTGTTGCTTTGAGTTCACACTCAGA
GTCTACTTTTACAAAAAAANNNTGNNNAGTATGCTAGCATCCAGTAGGAT
CTGTAAATTACGGGGGGCCCTTATCCCTGAGAAAGTGAGAGAAGAAAAAT
GTNNNCTTCCTTTTTTCTTTTTTTTTTCATTTTTCCCCCCCTCCTNNATT
AGCTAGACGGTGTCTTANTAAATTTTTTNNNNACCCCGTGGGCAGTACAT
AACTAAAAAAAAATTTTTNCNNNNTAAATTTACATTTTTTTTTTTTCGTG
TC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACATGCCTATAAACGGGAAAA
AAAATTACCCCTTAGGAAACAGAAACTTTGTATTATCTCACCCAGACATT
CACCCATCTGAATTTCCACTTCACTTGCAATGGCCAGCACCACTATGCAG
TGGGTAGGGAGAGTGTGAAGCAAGAAGCCGAGGAGGTACTGGTAGTATGG
TTAAAACTGCAAGATTTCTGAAACTGAGTGGCCAGACATGCAAGGGACCA
GACCCTGAATCCCCTTCTCACCTGGCCCTGCTCCACTTACAGATGTTTTC
CACTGGATTGTATTGCACCCTCCCCCCTATCAAGTGCATGCTCATGGCTA
ATACTAAATGTCCCCCATTTTCATCCAGAGTGTTGTGCTACTGCAGGATC
TTGAAGTTACAACCTTTCCAGAGATACCAAGAACACAGAAATGAGCAAGA
GCTGGCCTTCAGAGATCAGATGCAGTATTATTTACCACATAAACCAGTGT
AAAGGCCAATAGAAGGATGGGTAAGAAGTGTTCTGCTAATTCCAAAGAAG
GAGTAGTACCATCCAGAAGCTTTGTGGTGGAAGGGCAAAGGGGGTGTTTA
CAGATAAAAACAGGTGAGATCACAAGCATAGTATCCTAGTGATATAACCA
GGTTGAATTCTGAGGAGCAAGAGGAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a19.b1 MSMg01no160_a19.b1 CHROMAT_FILE:
MSMg01no160_a19.b1 PHD_FILE: MSMg01no160_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:54 2005
         (233 letters)



>mm_chr2_34169186_34169818
          Length = 633

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattgttcagcttctatttcagcttagtaaaatcttacttgttcttttgttttgttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctattgttcagcttctatttcagcttagtaaaatcttacttgttcttttgttttgttttg 373

                                                                       
Query: 61  ttttttaattttgcaaaacaacagtgacaaaaaagccaccatctgctttactgctcactt 120
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttttttaattttgcagaacaacaatgacaaaaaagccaccatctgctttactgctcactt 313

                                                                       
Query: 121 gcctcatagagacgatgtaaagattgttagattaaaaaaattatagtgaaactccttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcctcatagagacgatgtaaagattgttagattaaaaaaattatagtgaaactccttgga 253

                                                               
Query: 181 gagaagttctgatgaacaaaactgcaccagctgtcgatagtaaatattactg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gagaagttctgatgaacaaaactgcaccagctgtcgatagtaaatattactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no160_a19.g1 MSMg01no160_a19.g1 CHROMAT_FILE:
MSMg01no160_a19.g1 PHD_FILE: MSMg01no160_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:54 2005
         (282 letters)



>mm_chr2_34068754_34069435
          Length = 682

 Score =  497 bits (257), Expect = e-145
 Identities = 275/281 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacatgcctataaacgggaaaaaaaattaccccttaggaaacagaaactttgtattat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 attacatgcctataaacgggaaaaaaaattaccccttaggaaactgaaactttgtattat 260

                                                                       
Query: 61  ctcacccagacattcacccatctgaatttccacttcacttgcaatggccagcaccactat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacccagacattcacccatctgaatttccacttcacttgcaatggccagcaccactat 320

                                                                       
Query: 121 gcagtgggtagggagagtgtgaagcaagaagccgaggaggtactggtagtatggttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gcagtgggtagggagagtgtgaagcaagaagccgaggaggtactggtggtatggttaaaa 380

                                                                       
Query: 181 ctgcaagatttctgaaactgagtggccagacatgcaagggaccagaccctgaatcccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 381 ctgcaagatttctgaaactgagtggccagacatgcaagggaccagactctgaattccctt 440

                                                    
Query: 241 ctcacctggccctgctccacttacagatgttttccactgga 281
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ctcacctggccctgctccacttacagatgtttcccactgga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)