BAC Information

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BAC

Clone NameMSMg01-160B11
Chromosome2 (Build37)
Map Location 153,409,882 - 153,410,227
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160B11.T7 (MSMg01no160_b11.b1)MSMg01-160B11.TJ (MSMg01no160_b11.g1)
ACCAG359853AG359854
length731709
length of high quality
(start - end)
321 (45 - 365)386 (73 - 458)
definitionCHROMAT_FILE: MSMg01no160_b11.b1 PHD_FILE: MSMg01no160_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:57 2005CHROMAT_FILE: MSMg01no160_b11.g1 PHD_FILE: MSMg01no160_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCCTT
TGCCTCCCAAATGCTGGGATTAAAGGTGTGCACCACCATGCCCGGCTCGT
CTTCTAGAATCTTAACTACTTTTCTGTTTTGTTTTGTTTGGGGCTTTATT
TCTATTAGAGAGACAGACAGACAGACAGGCAGACAGACAGAGAGTTAGTT
CCCAAACACTCTAGCCTTAACAATACAGTCATGTCTGGGGAAAGTTAAAC
AAATGACCTCTGACCTTTGACCTTTGCACAGAGCAGGGAAAAAAGACTCC
AAAGCAGCCAGTCCTGTTTTTAGTTGCCTCCCCGCAGAGGTGTGGCTCAG
TGGCTCCCCAGAGACTTGAGCCACAGTCCAAGACCCGCTCATTTGCCAAT
TATGTTAATTAACAAGAGAAGCAGCTGCCCTGTGCCTTGACCTGTACCCC
ACCTGGAAGAGCCACTGAGACCGCAGCAAAGGAGACAACTCAGGTGAAAC
TAGTCTAGAGTCAGCTCCGACTGCTATGAGCCACTCTGACCTTCCAGCAC
CGGGATCATCTGGTTGGCCTGGCACCAGAATAATGCATCCCCACCCCCAA
CTCCAAATCCAAAAGGCTGCATCCTGTGTTCCTGCAGAAGGTTGAGACAA
ACGTATTGTGACATATCGCACATGCCTTTTA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCCTGTCAGAGAAATGGTTTGGAAAC
TGGGTATGGTGACCTCCCCCTCTAATCCCAGCACTTTGCAGCTGAAGGCA
AGAGGATACAACTTCAGGGCCAATCTGGGATGTGTACTACTCTGTCCTGG
CACACACTCACTCACTCACACACACAAACAAACACATACCACAGCATTTT
TGTTCCTGTTACTGCTGCTGCTGCTGCAGTCAGAATCCACTATGTAGCCC
AGGCAGGAATTCACTCTGTAGACCATGCTGGTCTCCATCTTGTACAAATA
TTCCTGCCTCTGCCTCCGAAGTGCCAAGATGACAAGCCATTGTGATATAT
TACATACACAAACTTCAAAACCCACACTCACAAAAGCAGGGACTGTGGAC
ATGGCGTCCTTTCGCAAAGTGCTTGCTGTGCAGGCATGAGGACCTGAGTT
CAGAGTCCCAACTTGCACATAAAAGCTGCGCATGGCAGGAAGTGCCTCCT
CGAACTGGGCAGGAGACAGGACATCCCTGGGGCTTGCTAACTAACTCTTC
TACTCAAACCTGTGAGCTCCAGCTCCAGGTGTTGTGCAACTGAGTACGAC
CACCGATGCTGACTTTTGATCTCTATGTTCTCACGCCAATGTGTACTTGA
CCGAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_b11.b1 MSMg01no160_b11.b1 CHROMAT_FILE:
MSMg01no160_b11.b1 PHD_FILE: MSMg01no160_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:57 2005
         (321 letters)



>mm_chr2_153409707_153410427
          Length = 721

 Score =  511 bits (264), Expect = e-149
 Identities = 312/346 (90%), Gaps = 28/346 (8%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcgaactcagaaatcctcctgcctttgcctcc 63
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 176 ggaattcactttgtagaccaggctggcctcgaactcagaaatcctcctgtttttgcctcc 235

                                                                       
Query: 64  caaatgctgggattaaaggtgtgcaccaccatgcccggctcgtcttctagaatcttaact 123
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 236 caaatgctgggattaaaggcgtgcaccaccatgcccggctcgacttctagaatcttaact 295

                                                                       
Query: 124 acttttctgttttgttttgtttggggctttatttctattagagagacagacagacagaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acttttctgttttgttttgtttggggctttatttctattagagagacagacagacagaca 355

                                                                       
Query: 184 ggcagacagacaga----------------------------gagttagttcccaaacac 215
           | ||||||||||||                            ||||||||||||||||||
Sbjct: 356 gacagacagacagacaggcaggcaggcaggcagacatgcagagagttagttcccaaacac 415

                                                                       
Query: 216 tctagccttaacaatacagtcatgtctggggaaagttaaacaaatgacctctgacctttg 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctagccttaacaatacagtcatgtctggggaaagttaaacaaatgacctctgacctttg 475

                                                         
Query: 276 acctttgcacagagcagggaaaaaagactccaaagcagccagtcct 321
           ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 476 acctttgcacagagcagggaaaaaagactccaaagcacccagtcct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)