CCACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTTACCATAAAGCAAGTCAAGGTAAATGAAATAATACT
TCCTCGGTAACATACTTTAAAGAAAAAAGAAGTGACTCAGGGGAAGCATT
TAGTTTTTAATAAGTTAATTCCACCAACCTAATCCCCGCCAGACCATTTA
CCTGAAATGTGAATTAGATGGTAATTCACTGTCAAATGAGAATAAAAAGC
AACAAGTAAGCTGTATACCTTATTAAAAATGGTTTAATAAATAAAGACAA
TTATTAAATAAATGTTAAGACTTTAAAATACTAACCCAAGGAAATACAAA
TTCAATAAGACTCTTGTTCTAACAATAACAGTTTTCTAAAACTAACCAAC
AAAAAGTATCCAGTGTTTTTCTTATGAAGATTATTAATAAAATATAGTAT
TGATGTGCACATTTTAACAACATGCTATTCTTCTGCAGGTAAAGGAGACA
TGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTATGCCTA
GGTCTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTAT
AGAAGTGAATAGCAAGGGACTCACATATATAACAATCTCTCTCAACATTT
CAATTTTATTTCTGTTCTTAGCAGTTCATTTTAATGGCTGGAAACTAGAC
CGAAAGTTGGGGGTGGTCTGCCTAGTGTTATAT

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAGTTAGGTGCCTGGGATTC
TAGAGTCATGTCATTTTATATGCCTGGAATATGAAAATGTGAAAATCTTC
GACTAGCAGGCGAGTAAATAATTGAAACAAGGTTGGCTCTGGTGGCAAAG
GCCTACAGTTCTAACCACCTGGAGGCTGACACAGGATGACTGCCACGTTC
AAGGCCCCCACCTGGTAACTTAGTGAGATTTTATCTCATGAAGATGTGAA
AAGGCGGGCTAGAGGCTTGGCCGGCAGTTTAGAGCTCCAGCTGTACTTAC
AGAGGACTTGGGTTCAGTTCCCAGCCCCTACAAGACAACCACTAGTGAAG
AGAGGACTAATGAATGGGGTCAGAACACTTGCTCCGAGTGTCTGAGTTCC
TGGGTTCAATCCTAGTGCTTCTATTATCTAAAATAATCTAGCCACAGTAC
TGATCTTTGTCTCTGCGTGCCCATGAGCTTTTGCTCCTCATCTCTTTTCT
CTATAATGCCTTGATTATCTTGGTAAGTTATTAATTGTAATATACTATTA
TTGTAATTGTCACTCGCTTAATCTGACCTTCATCATCTGTTTTCCCGTCG
TCTATATTTTTGCTTCTATTTTTTTTTGTATTCCTTCCTTATTTTTAATT
ACTTTTTTACTTTTTATTTTATTTTATTATCTCAAATACTTTTTTTATCC
TCATTCTC

Query= MSMg01no160_d06.b1 MSMg01no160_d06.b1 CHROMAT_FILE:
MSMg01no160_d06.b1 PHD_FILE: MSMg01no160_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:05 2005
         (670 letters)



>mm_chr2_124913063_124914132
          Length = 1070

 Score = 1265 bits (654), Expect = 0.0
 Identities = 663/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttaccataaagcaagtcaaggtaaatgaaataatacttcctcggtaacatac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattctcttaccataaagcaagtcaaggtaaatgaaataatacttccttggtaacatac 264

                                                                       
Query: 65  tttaaagaaaaaagaagtgactcaggggaagcatttagtttttaataagttaattccacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaagaaaaaagaagtgactcaggggaagcatttagtttttaataagttaattccacc 324

                                                                       
Query: 125 aacctaatccccgccagaccatttacctgaaatgtgaattagatggtaattcactgtcaa 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacctaatccccaccagaccatttacctgaaatgtgaattagatggtaattcactgtcaa 384

                                                                       
Query: 185 atgagaataaaaagcaacaagtaagctgtataccttattaaaaatggtttaataaataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgagaataaaaagcaacaagtaagctgtataccttattaaaaatggtttaataaataaa 444

                                                                       
Query: 245 gacaattattaaataaatgttaagactttaaaatactaacccaaggaaatacaaattcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacaattattaaataaatgttaagactttaaaatactaacccaaggaaatacaaattcaa 504

                                                                       
Query: 305 taagactcttgttctaacaataacagttttctaaaactaaccaacaaaaagtatccagtg 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagactcttgctctaacaataacagttttctaaaactaaccaacaaaaagtatccagtg 564

                                                                       
Query: 365 tttttcttatgaagattattaataaaatatagtattgatgtgcacattttaacaacatgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttcttatgaagattattaataaaatatagtattgatgtgcacattttaacaacatgc 624

                                                                       
Query: 425 tattcttctgcaggtaaaggagacatggctatatctaacatcgtgggatccaatgtgttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattcttctgcaggtaaaggagacatggctatatctaacatcgtgggatccaatgtgttt 684

                                                                       
Query: 485 gatatgctatgcctaggtcttccctggtttattaagactgcatttacgaatgcatctgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatatgctatgcctaggtcttccctggtttattaagactgcatttacgaatgcatctgct 744

                                                                       
Query: 545 cctatagaagtgaatagcaagggactcacatatataacaatctctctcaacatttcaatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctatagaagtgaatagcaagggactcacatatataacaatctctctcaacatttcaatt 804

                                                                       
Query: 605 ttatttctgttcttagcagttcattttaatggctggaaactagaccgaaagttgggggtg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttatttctgttcttagcagttcattttaatggctggaaactagaccgaaagttgggggtg 864

                 
Query: 665 gtctgc 670
           ||||||
Sbjct: 865 gtctgc 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_d06.g1 MSMg01no160_d06.g1 CHROMAT_FILE:
MSMg01no160_d06.g1 PHD_FILE: MSMg01no160_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:05 2005
         (245 letters)



>mm_chr2_125079550_125080194
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatagttaggtgcctgggattctagagtcatgtcattttatatgcctggaatatgaaaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 312 aaatagttaggtgcctgggattctagagtcaggtcattttatatgcctggaatatgaaaa 253

                                                                       
Query: 61  tgtgaaaatcttcgactagcaggcgagtaaataattgaaacaaggttggctctggtggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtgaaaatcttcgactagcaggcgagtaaataattgaaacaaggttggctctggtggca 193

                                                                       
Query: 121 aaggcctacagttctaaccacctggaggctgacacaggatgactgccacgttcaaggccc 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 192 acggcctacagttctaaccacctggaggctgacacaggatgactgccacgttcaaggctc 133

                                                                       
Query: 181 ccacctggtaacttagtgagattttatctcatgaagatgtgaaaaggcgggctagaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccacctggtaacttagtgagattttatctcatgaagatgtgaaaaggcgggctagaggct 73

                
Query: 241 tggcc 245
           |||||
Sbjct: 72  tggcc 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)